 oriTDB accession number | 100536 |
| Name | oriT_pCFSAN000189  |
Sequence Completeness  | intact |
| oriT length | 360 nt |
| oriT sequence | GATTATCAAGAGTCACATGTGAATCGGCCATTTATTTTATTAGAGTCAACCTGGATTCAC CAACTTCATACAGGCGAATCTGTTATACCGAAATTAAGGATTCGAATCCAGATTCGAATC CTTTAATTTGTCTTAATTTAGTGGTCTGATTCGTAGATGAATCTGGATTCAACTCCTTTA CGATTCACTAAAGATTTGCATGTGAATCCAGTATCTATATCGGACATAGAATAACGATAA AAATATTTACATAACACACTGAAATAAAAGGATAATCATGCAAGATTAAATCTTGCGACG GGTGTGGGATTTTGATGTTAAGGAGCAGGCATACAGAAATATGTCAGCCAGGAAGAATTC |
| IR (inverted repeat) | [280-287] [289-296] nt (GCAAGATT..AATCTTGC) |
| Location of nic site | [305-306] nt |
| Conserved sequence flanking the nic site | GACGGGTGT|GG |
| Note | predicted by the oriTfinder |
Visualization of oriT structure Reference| ID | 607 |
| Name | TraI_pCFSAN000189 |
| GenBank accession number | WP_020833546 |
| Family | MOBF |
| Length | 1767 aa |
| UniProt ID | _ |
| PDB ID | _ |
| Pfam | TrwC [PF08751.10], Evalue: 9.80E-72, Aligned region: 7..280 TraI [PF07057.10], Evalue: 4.60E-46, Aligned region: 1441..1562 AAA_30 [PF13604.5], Evalue: 1.90E-34, Aligned region: 970..1162 AAA_19 [PF13245.5], Evalue: 7.00E-10, Aligned region: 975..1111 |
| Note | putative relaxase |
| Protein sequence [Download] | MLSISSIKGDAGYYSHEDNYYASGSLDSRWMGEGAEKLGLKGEVASADMDAVRQGRLPDG SDLSRMVDGVNKHRSGYDLTFSAPKSVSVMALVGEDRRFIEAHNRAVAVVMKEVEQLVSA RITQEGKTETVLTGSMVAALYNHDTSRDLDPQVHTHALVFNVTFADEKWRSLASDIRMKT GFSENLYATKIALGNLYRSALREDIESMGFETVAAGKHGLWELKDVPVDIFSSRSQAIRE AAGPDASAKSRDVAALDTRQAKAWADPDLLKADWRRRLTDEKFDIGHYISQAQARVEITA PVVAGQGGMRAPGQPGIASSGEAADELVQKAVSDTISALSDKKVQFTWSEMLAGTVSRLP SAPGLFEQARAGIEAAIEGQRLIPLDREKGIFTSDIHLLNELSVHQLARTAVAEQTVLVF PERAQERDIPAGDAVSVLSQDKSPVAIFSGRGGAQTLRERTEDVAMMARSQGREVMVIAA DGRSGQFLSESPHLAGHVMLRSQMNADTVLPVQGTVIVDRAERLSLKETVLLQEKALSAG AQLIFMDTENRQGTGNALSVLKEADIPQYRFYGTQLPEVRLVSEADKRSRYGQLAQEYVR LSAEGRDVVAQVTGTREQQQLTEVIRDTRREAGELGREQVTLRVLEPVWLDSKTRHQRDN YRPGMVMEQWDAEKKTMTRHTIDRVAEATNSLVLQGEDGTRLTMKVTQLDGSWSLYRSRT LEVSEGDRVRTLGRELKGAIKAKEQFTVAGLENGAVRLRSGDRELCLPTERAVKLAHDYV EGTGAGTSASRTVLAAVGPRGLNKQALNALAQSGSDIRIYTPLEGRQAARKVESVSVVRL ASDQVRQSTGEANLDTAIQASRERLMSDAEQAVNLAIPRAQQGQVYLSELTLLAEAVKSG QPLADVRAEIARQVDSGALIKLDSVAGAGNRVLVPRVAYEMEKTIIRHIAEGKDAVQPLM ALTPASVLSGLTAGQRDATRTVLENTDRFMAIQGYAGVGKTTQFRAVMGALNTLSESVRP QVIGLGPTHRAVHEMREAGVEARTLASFLSETRLAIQAGETPDFRNVLFLTDESSMVGNR DMAELYQLVAAGGGRMVSSGDTAQLQAISTGLPFRLVQQRSAIDTVVMQEIVRQTPALRP AIESIIAGQVEISLRQVDDVTPQQVPRQPGAWVPDNSVMEIRAPKKEQDQVQDTPVAGEQ TLTPEQLALVRTDIIEAIRDDWMGRTPEAQQQTLVVAELNADRHAINDAIHTARHEKGDT GAEERTFTVLEPLRVPDNALRAAETFAEYTGAVAMMNERYWTVAEVDTQDAVVTLRNADG ESVLISPQQNTAQDISLFTPRDLTISQGDRVRFTRSDTDRGYVANSLWEVAGFTDDGAIR FRQGDQEKIVDPQAMTEDRHIDLAYALTVYGVQGASERFAIALTGTEGGRKRMASLESTY VTLSRAKEHVQVYTDDLAGWSADARHSNAGQTAHDLLHQKSDHESDTGNRLLATASRLDK TALGRRVLAENGLEGETMARFIAAGKKYPSPYVALPAWTRHGKAAGALLTEIRIEDDGMR VVLSDESRLRGGEDAQFAGLQASRNGQTLIADDAQTALRLAQENPESGVVIRLHGEERLL NAARLTGGRITEPDEVARSVRSVAEAESAAKAEDPITLPPDEQQKLAEAQEKAARELAEQ ARQELLPALPGTEGDKPDPLLSASDERRLRDGTERETRELDEAVREAVAEGREPRQQVCD QMQRTEREWVVNVPEKEIELEKTLGGD |
Reference| ID | 997 |
| Plasmid name | pCFSAN000189 |
| GenBank accession number | NC_021817.1 |
| Incompatibility group | IncFII(S) |
| Genome size | 78193 bp |
| Coordinate of oriT [Strand] | 35811..36170 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 [1173427] |
Reference| [1] Hoffmann M et al (2016) Tracing Origins of the Salmonella Bareilly Strain Causing a Food-borne Outbreak in the United States. J Infect Dis. 213(4):502-8. [PMID:25995194] |
| [2] Timme RE et al (2013) Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp enterica inferred from genome-wide reference-free SNP characters. Genome Biol Evol. 5(11):2109-23. [PMID:24158624] |