oriTDB
The information of the oriT region
oriTDB accession number 100528
Name oriT_pCSA2  insolico
Sequence Completeness intact
oriT length 174 nt
oriT sequence GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAC TATGTTGGCACGGATGCGAATATCAGTGAAGTGCTTCATGTGGCAGGAGAAAAATGCAGC AGCGGAGCGTCAGCAGAATATGCGATACAGGATATATTCCGCTTCCTCGCTCAC
IR (inverted repeat)[2-11] [15-24] nt  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site [55-56] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:2-11;R:15-24;D:55-56
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 599
Name Mob_pCSA2 insolico
GenBank accession number YP_008047259
Family MOBP
Length 573 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 2.90E-16, Aligned region: 66..263
Note putative relaxase
Protein sequence [Download] MPGLSGCGTPFLRKERTMIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVREL
IDASPYVKKYTSGVLSFAEADLPPGQREKLMASFERVLMPGLDKDQYSILWVEHEDKGRL
ELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPAGL
PKTKQEAAEAITRGLLSLASSGELKSRQDVTEALEGAGFEVVRTTKSSISIADPDGGRNI
RLKGAIYEQSFNAGEGLRAAIESAAEEYRRDAESRIQRARAVCQSGTERKREENQRRHQR
PRAEYERGDGEKPAERVADGREDMAHHPDGVSAADRHEREHSVVAGTADNRQLHTSSSAG
RYPGENDRPDVGSTLSGEQRRPEVPYPAAGDASRSHPLRRDDLDPPETGVAENDRAGKAV
AERIRAATAGLLRARRPEVPYPAAGDASRSHPLRRDDLDPPETGVAENDRAGKAVAERIR
AATAGLLAKAGRMGERLRGMAEHVWTYATGERGAERARVGLEHAGAEFKRAAAPLVRELN
AIEEKAALEYQRQNELELTLRQKQKSFDGPKMR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 989
Plasmid name pCSA2
GenBank accession number NC_021293.1
Genome size 5103 bp
Coordinate of oriT  [Strand] 2481..2654 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Cronobacter sakazakii ATCC 29544 [28141]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU