oriTDB

The information of the oriT region

oriTDB accession number	100528
Name	oriT_pCSA2
Sequence Completeness	intact
oriT length	174 nt
oriT sequence	GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAC TATGTTGGCACGGATGCGAATATCAGTGAAGTGCTTCATGTGGCAGGAGAAAAATGCAGC AGCGGAGCGTCAGCAGAATATGCGATACAGGATATATTCCGCTTCCTCGCTCAC
IR (inverted repeat)	[2-11] [15-24] nt (GTTTCGGGGC..GCCCTGAACC)
Location of nic site	[55-56] nt
Conserved sequence flanking the nic site	CTGG\|CTTA
Note	predicted by the oriTfinder
	L:2-11;R:15-24;D:55-56

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAC

61

TATGTTGGCACGGATGCGAATATCAGTGAAGTGCTTCATGTGGCAGGAGAAAAATGCAGC

121

AGCGGAGCGTCAGCAGAATATGCGATACAGGATATATTCCGCTTCCTCGCTCAC

Reference
N/A

I. Information of Relaxase

ID	599
Name	Mob_pCSA2
GenBank accession number	YP_008047259
Family	MOB_P
Length	573 aa
UniProt ID	_
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 2.90E-16, Aligned region: 66..263
Note	putative relaxase
Protein sequence [Download]	MPGLSGCGTPFLRKERTMIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVREL IDASPYVKKYTSGVLSFAEADLPPGQREKLMASFERVLMPGLDKDQYSILWVEHEDKGRL ELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPAGL PKTKQEAAEAITRGLLSLASSGELKSRQDVTEALEGAGFEVVRTTKSSISIADPDGGRNI RLKGAIYEQSFNAGEGLRAAIESAAEEYRRDAESRIQRARAVCQSGTERKREENQRRHQR PRAEYERGDGEKPAERVADGREDMAHHPDGVSAADRHEREHSVVAGTADNRQLHTSSSAG RYPGENDRPDVGSTLSGEQRRPEVPYPAAGDASRSHPLRRDDLDPPETGVAENDRAGKAV AERIRAATAGLLRARRPEVPYPAAGDASRSHPLRRDDLDPPETGVAENDRAGKAVAERIR AATAGLLAKAGRMGERLRGMAEHVWTYATGERGAERARVGLEHAGAEFKRAAAPLVRELN AIEEKAALEYQRQNELELTLRQKQKSFDGPKMR

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	989
Plasmid name	pCSA2
GenBank accession number	NC_021293.1
Genome size	5103 bp
Coordinate of oriT [Strand]	2481..2654 [-]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Cronobacter sakazakii ATCC 29544 [28141]

Reference
N/A