oriTDB

The information of the oriT region

oriTDB accession number	100518
Name	oriT_pDPT2
Sequence Completeness	intact
oriT length	82 nt
oriT sequence	GGGTGTCGGGGCGCAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA ACCATGCGGCATCAGTGCGGAT
IR (inverted repeat)	[3-12] [16-25] nt (GTGTCGGGGC..GCCCTGACCC)
Location of nic site	[56-57] nt
Conserved sequence flanking the nic site	CTGG\|CTTA
Note	predicted by the oriTfinder
	L:3-12;R:16-25;D:56-57

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GGGTGTCGGGGCGCAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA

61

ACCATGCGGCATCAGTGCGGAT

Reference
N/A

I. Information of Relaxase

ID	589
Name	MobA_pDPT2
GenBank accession number	YP_007438843
Family	MOB_P
Length	521 aa
UniProt ID	L8BU45
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 7.30E-19, Aligned region: 41..246
Note	putative relaxase
Protein sequence [Download]	MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSF AEKELPPGGREKVMASFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQSGKRL QPYYDRADRPRIDAWQTLVNHHYGLHDPNAPENRRILTLPDNLPETKQALAESVTRGIDA LYHVGEIKGRQDVIQALTEAGLEVVRVTRSSISIADPNGGKNIRLKGAFYEQSFTDGRGV REKAERESRIYRDNTERRVQEARKICKQGCDIKRDENQRRYSPVHSFDRGITEKTPGRGE RGDDAAQEGRVKAGREYGHDVTGDGHFPVYREWRDALVSWRDDTGEPGRNQEAERESGEA EREDMGRALSRGEQRTFSGVARGDESRNELDDGKRETECRKAGTGVTEHDGAGKTFAERI RATATGLYAAAERMGERLRGIAENVFAYATGQRDAERAGHAVESAGAALERADRTLEPVI QREQEIRDERLIQEREHALSLERERQLEIQERTLDGPSLGW

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	979
Plasmid name	pDPT2
GenBank accession number	NC_020251.1
Incompatibility group	ColRNAI
Genome size	5262 bp
Coordinate of oriT [Strand]	5056..5137 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Shigella sonnei EG211 [624]

Reference
N/A