oriTDB
The information of the oriT region
oriTDB accession number 100511
Name oriT_pB1019  insolico
Sequence Completeness intact
oriT length 177 nt
oriT sequence GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA GTATGTTACGGCGAGATGGAGATTCGGGGAAGTGCTTCATGTGGCAAGGGGGAAAATACG GCTGCGGGGCGTAAGTGCAAAATGCAGGTAACGATGAAATGACGCCTCCTCGCTCAC
IR (inverted repeat)[5-12] [16-23] nt  (TTCGGGGC..GCCCTGAA)
Location of nic site [56-57] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:5-12;R:16-23;D:56-57
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 582
Name MbeA_pB1019 insolico
GenBank accession number YP_007316681
Family MOBP
Length 525 aa
UniProt ID K9MQ37
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 4.50E-15, Aligned region: 66..264
Note putative relaxase
Protein sequence [Download] MPVWNGCGMPYWKKGRTMIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVREL
IDASPYVKKYTSGVLSFAEADLPPGQREKLMASFERVLMPGLDKDQYSILWVEHADKGRL
ELNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTVVNGRLGLHDPNDPENRRALVTPSGL
PETKQEAAETITRGLLMLASSGELKTRDDVTGALTAAGFEVVRTTKNSISIADPDGGRNI
RLRGAIYEQSFNGLEGLRGEIESTAAAYRREAESRIQQARERCQIGTERKREENQRRHQR
PRTGDERGDAVEPAERAANGRADVADHHHGVRAAVRQPERGAVVPGEPDSGEPGGNQAAE
RYAVETAHADVGRDLSGEPQRTVSGAAGGDESRNGPDGGQQDAERGEAGTGVEQNDGTGK
TIVERVRAATAGLLEKAGRVGERLRGMAEDVWSYATGERGAERARVGLEQAGAEFERAAA
PVIDRLNEIEQQRYGQTTEKEPEKTADLVPERQRTLSHGDREYGD
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 972
Plasmid name pB1019
GenBank accession number NC_019988.1
Incompatibility group IncN
Genome size 5225 bp
Coordinate of oriT  [Strand] 3046..3222 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Klebsiella pneumoniae BB1088 [573]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU