oriTDB
The information of the oriT region
oriTDB accession number 100510
Name oriT_pB1023  insolico
Sequence Completeness intact
oriT length 175 nt
oriT sequence GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAC TATGTTGGCACGGATGAGGATGTCAGTGAAGTGCTTCATGTGGCAGGAGAAAAAAGGCGG CACCGGCGCGTCAGCAGAATATGTGATACAGGATATATTCCGCTTCCTCGCTCAC
IR (inverted repeat)[2-11] [15-24] nt  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site [55-56] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:2-11;R:15-24;D:55-56
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 581
Name MbeA_pB1023 insolico
GenBank accession number YP_007316673
Family MOBP
Length 525 aa
UniProt ID K9MQA8
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 4.50E-15, Aligned region: 66..264
Note putative relaxase
Protein sequence [Download] MPVWNGCGMPYWKKGRTMIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVREL
IDASPYVKKYTSGVLSFAEADLPPGQREKLMASFERVLMPGLDKDQYSILWVEHADKGRL
ELNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTVVNGRLGLHDPNDPENRRALVTPSGL
PETKQEAAETITRGLLMLASSGELKTRDDVTGALTAAGFEVVRTTKNSISIADPDGGRNI
RLRGAIYEQSFNGLEGLRGEIESTAAAYRREAESRIQQARERCQIGTERKREENQRRHQR
PRTGDERGDAVEPAERAANGRADVADHHHGVRAAVRQPERGAVVPGEPDSGEPGGNQAAE
RYAVETAHADVGRDLSGEPQRTVSGAAGGDESRNGPDGGQQDAERGEAGTGVEQNDGTGK
TIAERVRAATAGLLEKAGRVGERLRGMAEDVWSYATGERGAERARVGLEQAGAEFERAAA
PVIDRLNEIEQQRYGQTTEKEPEKTADLVPERQRTLSHGDREYGD
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 971
Plasmid name pB1023
GenBank accession number NC_019986.1
Incompatibility group IncN
Genome size 3510 bp
Coordinate of oriT  [Strand] 238..412 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Enterobacter cloacae BB1092 [550]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU