oriTDB

oriT
Relaxosome
T4CP
Plasmid&Host

The information of the oriT region

oriTDB accession number	100507
Name	oriT_pNDM-OM
Sequence Completeness	core
oriT length	106 nt
oriT sequence	AGTACGGGACAAGATGTGTTTTTGGAGTACCGCCGACACGCGGCGGCCGTCCAAAAACGT CTTGGTCAGGGCAAGCCCCGACACCCCCTAACGAGGTTAGCTATCT
IR (inverted repeat)	[18-35] [41-58] nt (GTTTTTGGAGTACCGCCG..CGGCGGCCGTCCAAAAAC)
Location of nic site	_
Conserved sequence flanking the nic site	_
Note	predicted by the oriTfinder
	L:18-35;R:41-58

Visualization of oriT structure

Reference
N/A

I. Information of Relaxase

ID	578
Name	Putative relaxase of pNDM-OM
GenBank accession number	YP_007195471
Family	MOB_P
Length	659 aa
UniProt ID	B7T4S7
PDB ID	_
Pfam
Note	putative relaxase
Protein sequence [Download]	MSRSESRKTDDRIQVRCSTEVKAKLTEKAHEAGLSLSQYLIKSGLGKRIQSKGNYNALAA LVKITALQKHLFNEGAGVHSKEYSEILIEVKKAAQKLQQEMDGDT

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	968
Plasmid name	pNDM-OM
GenBank accession number	NC_019889.1
Incompatibility group	IncL/M
Genome size	87185 bp
Coordinate of oriT [Strand]	14418..14523 [+]
Drug resistance	bleomycin resistance; sulfonamide resistance
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Klebsiella pneumoniae 601 [573]

Reference

[1] Bonnin RA et al (2013) Comparative genomics of IncL/M-type plasmids: evolution by acquisition of resistance genes and insertion sequences. Antimicrob Agents Chemother. 57(1):674-6. [PMID:23114767]