oriTDB

oriT
Relaxosome
T4CP
Plasmid&Host

The information of the oriT region

oriTDB accession number	100502
Name	oriT_p5580
Sequence Completeness	core
oriT length	39 nt
oriT sequence	GCACATTTACGAAGTAAAGTATAGTGCGTTATACTTTAC
IR (inverted repeat)	[3-10] [14-20] nt (ACATTTAC..GTAAAGT)
Location of nic site	[28-29] nt
Conserved sequence flanking the nic site	GCG\|TTA
Note	predicted by the oriTfinder
	L:3-10;R:14-20;D:28-29

Visualization of oriT structure

Reference
N/A

I. Information of Relaxase

ID	573
Name	Mob_p5580
GenBank accession number	YP_006965545
Family	MOB_V
Length	500 aa
UniProt ID	K0KVT0
PDB ID	_
Pfam	Mob_Pre [PF01076.18], Evalue: 3.30E-73, Aligned region: 1..194
Note	putative relaxase
Protein sequence [Download]	MSYLVARMQKMKVGNLGGAYRHNERVFENHSNKDIDTSRSHLNYELTDRDRSVSYEKQIK DYVNEKKSSKRAIRKDAVLCDEWIITSDKDFFERLDQEQTRAFFETAKNYFAERYGLENI AYASVHLDESTPHMHMGVVPMVDGKLSSKAVFTREELKAIQEELPKYMNEQGFELSRGQL GSDKKHLSVADYKAKIGKEALNKELLGLGAPRYWHKEEDRPATAEEIAGYESLASLFAGE EMKLREATLEERFTWLDSHRNDLKGDLSHLEELVDKKIEEYTRIDSEASERLSELSELNS KVKDREKELRGLESDSERLSDKVVRLEKEHRETTQLLVEQNRNLRKISFQDLDRRRIAED LHEELEKATPKLFGGSFNFTADFVGRLKTFMSEVVEKLEQVINQNEVLRKALEGMKQAKE RAERELLQEEWKTQRLETENQNLRQENKELKVSKNLLEDIQEVITEKEVSSLNKRLDELR EARMASKRGYEPKRSKGRSI

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	963
Plasmid name	p5580
GenBank accession number	NC_019370.1
Genome size	4950 bp
Coordinate of oriT [Strand]	879..917 [-]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Streptococcus dysgalactiae subsp. equisimilis Sde5580 [119602]

Reference

[1] Palmieri C et al (2013) Interspecies mobilization of an ermT-carrying plasmid of Streptococcus dysgalactiae subsp equisimilis by a coresident ICE of the ICESa2603 family. J Antimicrob Chemother. 68(1):23-6. [PMID:22949621]