oriTDB
The information of the oriT region
oriTDB accession number 100500
Name oriT_pSB13  insolico
Sequence Completeness intact
oriT length 83 nt
oriT sequence GGGTGTCGGGGTGAAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTGA ACCATGCGGCATCAGTGCGGATT
IR (inverted repeat)[3-11] [17-25] nt  (GTGTCGGGG..CCCTGACCC)
Location of nic site [56-57] nt
Conserved sequence flanking the
  nic site 		CTGG|CTGA
Note predicted by the oriTfinder
L:3-11;R:17-25;D:56-57
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 571
Name MobA_pSB13 insolico
GenBank accession number YP_006964840
Family MOBP
Length 517 aa
UniProt ID I6M980
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 6.30E-20, Aligned region: 49..246
Note putative relaxase
Protein sequence [Download] MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSF
AEKELPPGGREKVMASFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELETGKRL
QPYYDRADRPRIDAWQTLVNHHYGLHDPNAPENRRTLTLPDNLPETKQALAEGVTRGIDA
LYHAGEIKGRQDVIQALTEVGLEVVRVTRSSISIADPNGGRNIRLKGAFYEQSFTDGRGV
REKAERESRIYRDNAERRVQQARKICKQGCDLKRDENQRRYSPVHSFDRGITEKTPGRGE
RGDDAAQEGRVKAGREYGHDVTGDGHFPVYREWRDALVSWREDTGEPGRNQDTGRNIAET
EREDMGRGVCAGREKEISGHPAGEIGNGDSLSGEGLGTTDGVTQSDGAGKTFAERLRATA
TGLYAAAERMGERLRGIAENVFAYATGQRDAERAGHAVESAGAALERADRTLEPVIQREQ
EIRDERLIQEREHELSLERERQPEIQERTLDGPSLGW
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 961
Plasmid name pSB13
GenBank accession number NC_019357.1
Genome size 5424 bp
Coordinate of oriT  [Strand] 2556..2638 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Shigella boydii C13 [621]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU