oriTDB
The information of the oriT region
oriTDB accession number 100498
Name oriT_R830b  insolico
Sequence Completeness core
oriT length 105 nt
oriT sequence AGTACGGGACAAGATGTGTTTTTGGTACACCGCCGGCACGCCGGCAGTGACGCAAAAACG TCTTGGTCAGGGCAAGCCCCGACACCCCCTAACGAGGTTAGCTAT
IR (inverted repeat)[18-35] [42-59] nt  (GTTTTTGGTACACCGCCG..CGGCAGTGACGCAAAAAC)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:18-35;R:42-59
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 569
Name Putative relaxase of R830b insolico
GenBank accession number YP_006964608
Family MOBP
Length 659 aa
UniProt ID I3W4P9
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.70E-32, Aligned region: 13..334
Note putative relaxase
Protein sequence [Download] MVIPKIIEGRRDKKSSFGQLIKYMADKPSQELTDTVQPTPETALAVKSDMFEGLNNYLIR
KQKVISTPVDVEPGVQRVVVGDVTCQYNTFSLDGAAQEMNSVSQQNTRCKDPVMHYVLSW
PDYEKPNDDQVFDSVKFTLASMGMSDHQYVAAIHRDTDNLHVHVAVNRINPQTYKAASSS
FTKDTLHQACRLLELKNGWSHSNGAYVVNDRQQIVRNPHSKKERGNWRSLDRINKMENKE
GVETLYRYIVGDEQVGGSRQNLIHVSAGLREAKSWDDVHKTFADIGLRVEKAQGKKGYVI
THEHQNQKTAVKASLVFNKAQYTLKSIDERFGEYQPSHIEPAKVSVFKTAYTPGAYRRDA
NKRLQRKIERAEERMLLKGRYRAYRNNLPIYSPDKDRIADEYRKIAQHTRLVKNNVRHSV
SDPHTRKLMYNLAEFKRLQAVANLRLSLREERNGFRAANPRLSYREWVEQEALKGDKAAL
SQMRGFAYSSRKKEKYKQQLVEQIGFNRTFNAITSHDRDDVAVMASARHGVKPRLLKDGT
VIFERDGKPVAADRGHIVLTESNGIDKEKTADLAIALTIAGKAKSVRVDGDGEFKELCCN
RIVDAAVNHNHPVAQGITFTDAAQQAYAQNEKHRLIREQNNSKNEMQFRSESDDKFNPK
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 959
Plasmid name R830b
GenBank accession number NC_019344.1
Incompatibility group IncL/M(pOXA-48)
Genome size 81793 bp
Coordinate of oriT  [Strand] 44498..44602 [+]
Drug resistance _
Heavy-metal resistance insolico mercury resistance
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Serratia marcescens [615]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU