oriTDB
The information of the oriT region
oriTDB accession number 100496
Name oriT_pNCPPB880-40  insolico
Sequence Completeness incomplete
oriT length 30 nt
oriT sequence ATTGCGTATGGTGTATAGCTCGTTAAGGGA
IR (inverted repeat)_
Location of nic site [14-15] nt
Conserved sequence flanking the
  nic site 		GGTGT|ATAGC
Note predicted by the oriTfinder
D:14-15
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 567
Name TraI_pNCPPB880-40 insolico
GenBank accession number YP_006964196
Family MOBF
Length 989 aa
UniProt ID I3W2D2
PDB ID _
Pfam TrwC [PF08751.10], Evalue: 2.70E-80, Aligned region: 12..289
AAA_30 [PF13604.5], Evalue: 3.10E-44, Aligned region: 493..680
Viral_helicase1 [PF01443.17], Evalue: 7.30E-05, Aligned region: 513..650
Viral_helicase1 [PF01443.17], Evalue: 1.70E-05, Aligned region: 833..924
UvrD_C_2 [PF13538.5], Evalue: 1.10E-07, Aligned region: 876..923
Note putative relaxase
Protein sequence [Download] MIDITTITRQSFGKVVSYYADGADDYYAKDGTAMQWQGEGAEALGLSGEVDQKRFRELLE
GKIDERTHLKRSSSEGTNKERIGYDLTFSAPKGVSLQALVDGDQRIIAAHDKAVTAAVRE
AEMLAKARHTVNKKTSVEDTKNLVVAKFRHETSRALDPDLHSHAFVMNMTQRADGEWRAL
MNDAIVNSSMHIGNVYKAELAKELEKAGFVLRYERNGTFDLAHFSDHQIKEFSARSQQIE
AWLEKKGLDRSTASHAEKNQAALATRDKKAPNIDREELRKVWQARSRDLGIDYKSREWAG
EGGRGPDDKGRSPTPSPQLEKPLEWHADKTLEFAIQSLTERKAVITVKELMDTAMKHGFG
RLNVDDIRAGIERRLESGHLIKEEPLYSAGNAENDKAGKTRKGAEKPAKAPVLLSRKEWV
DQLVKSGRTRSEAVKLVESGIKSGRLKKGDTRFTTHIAQRRERDILALERMGRGKFESTI
SPEKVKGFLDDRTLNAEQGKAVSQIVQGRNQFMAVQGYAGVGKSFMTTAARDLLEENGYK
VTALAPYGSQKKALEEEGIEARTVASFLKAQDKKIDKDTVVFIDEAGVIPARQMNEIMKV
IEQAGARAVFLGDTAQTKAIEAGKPFEQLMKAGMETARMEDIQRQKNPVLLEAVKLAAAG
DARGSLEKIAKITEVKEDGDRYSQIVQSYVSLPKAERDNALVITGTNDSRQQINAGIRRG
LELEGKGQDFHLLNRLDTTQAERRHSKYYEKGAIIVPEQDYKNGLMRGEQYKVLDTGPGN
RLTVENATGDRIQFSPAQCTKLSVYRNEKSELAVGDWVKITRNDKTLDLANGDRFIVSEV
RDGKIILTDGKPGSEDPERKLGRVEIDASQSMFIGYAYASTVHSAQGLTCDKVLVNLETE
SKTTAKDVYYVAVSRARHEAEIYTDSAAKLGNAVSRLNIKDAALDIKQLSKYAQPKTKTI
ENSTPEKQVKETGVAHSKRQKGDDRSIGL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 957
Plasmid name pNCPPB880-40
GenBank accession number NC_019341.1
Genome size 41724 bp
Coordinate of oriT  [Strand] 11647..11676 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Pseudomonas syringae NCPPB880 [317]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU