oriTDB

The information of the oriT region

oriTDB accession number	100496
Name	oriT_pNCPPB880-40
Sequence Completeness	incomplete
oriT length	30 nt
oriT sequence	ATTGCGTATGGTGTATAGCTCGTTAAGGGA
IR (inverted repeat)	_
Location of nic site	[14-15] nt
Conserved sequence flanking the nic site	GGTGT\|ATAGC
Note	predicted by the oriTfinder
	D:14-15

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

ATTGCGTATGGTGTATAGCTCGTTAAGGGA

Reference
N/A

I. Information of Relaxase

ID	567
Name	TraI_pNCPPB880-40
GenBank accession number	YP_006964196
Family	MOB_F
Length	989 aa
UniProt ID	I3W2D2
PDB ID	_
Pfam	TrwC [PF08751.10], Evalue: 2.70E-80, Aligned region: 12..289 AAA_30 [PF13604.5], Evalue: 3.10E-44, Aligned region: 493..680 Viral_helicase1 [PF01443.17], Evalue: 7.30E-05, Aligned region: 513..650 Viral_helicase1 [PF01443.17], Evalue: 1.70E-05, Aligned region: 833..924 UvrD_C_2 [PF13538.5], Evalue: 1.10E-07, Aligned region: 876..923
Note	putative relaxase
Protein sequence [Download]	MIDITTITRQSFGKVVSYYADGADDYYAKDGTAMQWQGEGAEALGLSGEVDQKRFRELLE GKIDERTHLKRSSSEGTNKERIGYDLTFSAPKGVSLQALVDGDQRIIAAHDKAVTAAVRE AEMLAKARHTVNKKTSVEDTKNLVVAKFRHETSRALDPDLHSHAFVMNMTQRADGEWRAL MNDAIVNSSMHIGNVYKAELAKELEKAGFVLRYERNGTFDLAHFSDHQIKEFSARSQQIE AWLEKKGLDRSTASHAEKNQAALATRDKKAPNIDREELRKVWQARSRDLGIDYKSREWAG EGGRGPDDKGRSPTPSPQLEKPLEWHADKTLEFAIQSLTERKAVITVKELMDTAMKHGFG RLNVDDIRAGIERRLESGHLIKEEPLYSAGNAENDKAGKTRKGAEKPAKAPVLLSRKEWV DQLVKSGRTRSEAVKLVESGIKSGRLKKGDTRFTTHIAQRRERDILALERMGRGKFESTI SPEKVKGFLDDRTLNAEQGKAVSQIVQGRNQFMAVQGYAGVGKSFMTTAARDLLEENGYK VTALAPYGSQKKALEEEGIEARTVASFLKAQDKKIDKDTVVFIDEAGVIPARQMNEIMKV IEQAGARAVFLGDTAQTKAIEAGKPFEQLMKAGMETARMEDIQRQKNPVLLEAVKLAAAG DARGSLEKIAKITEVKEDGDRYSQIVQSYVSLPKAERDNALVITGTNDSRQQINAGIRRG LELEGKGQDFHLLNRLDTTQAERRHSKYYEKGAIIVPEQDYKNGLMRGEQYKVLDTGPGN RLTVENATGDRIQFSPAQCTKLSVYRNEKSELAVGDWVKITRNDKTLDLANGDRFIVSEV RDGKIILTDGKPGSEDPERKLGRVEIDASQSMFIGYAYASTVHSAQGLTCDKVLVNLETE SKTTAKDVYYVAVSRARHEAEIYTDSAAKLGNAVSRLNIKDAALDIKQLSKYAQPKTKTI ENSTPEKQVKETGVAHSKRQKGDDRSIGL

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	957
Plasmid name	pNCPPB880-40
GenBank accession number	NC_019341.1
Genome size	41724 bp
Coordinate of oriT [Strand]	11647..11676 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Pseudomonas syringae NCPPB880 [317]

Reference
N/A