oriTDB
The information of the oriT region
oriTDB accession number 100495
Name oriT_pB76-81  insolico
Sequence Completeness intact
oriT length 146 nt
oriT sequence CGAATTCGATAAACAGGCACGTTACCGATTGTCTACAAAAAAGAGCTTCGCCTTTTTCGT AGCCAATCGACGTGCCAAAGGGGATACCCCTTTGAAACCCCGCAGAGCGGGAAAGCGTTG TTGTTGTCGTTGTTGGTTGTCGTCAT
IR (inverted repeat)IR1: [38-43] [52-57] nt  (AAAAAG..CTTTTT)
IR2: [72-83] [87-98] nt  (GTGCCAAAGGGG..CCCCTTTGAAAC)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:38-43;R:52-57;L:72-83;R:87-98
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 566
Name Relaxase_pB76-81 insolico
GenBank accession number YP_006963256
Family MOBP
Length 1249 aa
UniProt ID I3W0C8
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 3.40E-07, Aligned region: 10..266
Note putative relaxase
Protein sequence [Download] MLIRVSGYNTGAQEYLEQGNKSGREFTRDELDHRLIIEGQLSVTRAIYESIPDHGQDRYL
TFTLSFKEDTVSPELLKAVTTDFKNFFMHAYKPEEFNLYAEAHLPKMKTVTDRKTGEVID
RKPHIHIIIPRINLLSGNEANPVDVYKNHEKYFEAFQEHINQKYGLSSPRENVRADITDA
ASVLSRYKGDDFYGKNRQFKQQLVKQVIERGVTSRADFYALVAEHGETRIRNEGKDNEYI
SVKLPGDAKGTNLKDTIFQDAFIVRRELKKPPLEASVIQERLLAWPQRAREIKYVNKATP
KFRKQYSQASPEERVRLLAERENNFYRAHGDDYESVHTWQRQRDNQRSPAETAGRRTAAP
AHGLQDLSVSDVADHRQAGPTRSRDGALLLPTDAHVHVGQSQPGGDSGLRSSVPGGGRGR
RVGSTAERGRGGSQPAAVSQETKGTATPAGATGRRRAGAGKPRNTRVRAGRVVPPYAQNP
HRVATIADIEERGRRLFDPLKRPSDNALVFYRSSSHPQVADQLPQATAATTTPVQSTAGR
RPRSSGKPRPPRQWRPGAVPPYAKNPHRVATVADIEQRARMLFDPLKRPADKALVFKRAS
IKALTVNKHASTVAAYFTRQAQHNQIAPAHRRAIRRIDQQYFALRRAVFSDQRLTRQDKA
QLVSVLTFERLKAREQFHKPQPNIEVNLMGSAAIRNLLDDEKEDPGFSISGARGPGREGV
RDQVKRIMDHFAKQVDPAAASERARDLSAKDLYTRKAKFSQNVHYLDKQTDKTLFVDTGT
TISMRRTGITEAGVSVALQLARERFGSTLTINGTAEFKKLVIEAVAKNGLDVHFTDKAMN
QSLADRRAELDIERDGQSIGPATDLPRHVDDATRDVRDQADRLGATVPIEALYGQGKTAD
QVSQALTAQLDTVPESERIAFVETVAITLGIPERGQPKGDQAFAQWQAQRAQPAANSAAS
ATSEAQANVPTPSDAVPEPVSPEAAKPALANDPDLQSPSELVRLEAQWRRDFPMSEADVR
ASDTVMGLRGEDHAIWIIATDDKTPEAAALLTAYMENDSYREAFKASIVAAYKQVENSPQ
SVDDLDHLTAMAAQIVNEVEERLFPTPQAATGQTAPSRSKVIEGTLIEHGEAPYQHNDDN
QMSYFVTLKPEGGKPRTVWGVGLEDAMSDADLKQGDQVRLQDLGTQPVVVQVIEEDGTVT
DKTVNRREWSAQPVAPEREVAETTPKGQAMAAGTPDLSSPDEDDGMSVD
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 956
Plasmid name pB76-81
GenBank accession number NC_019328.1
Genome size 76232 bp
Coordinate of oriT  [Strand] 783..928 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Pseudomonas syringae B76 [317]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU