oriTDB
The information of the oriT region
oriTDB accession number 100484
Name oriT_pS51B  insolico
Sequence Completeness intact
oriT length 175 nt
oriT sequence GGTTTCGGGGCGCAGCCCTGAACCAGTCACGCAGCGCTAGCGGAGTGTATACTGGCTTAC TATGTTGGCACGGGTGCGGGAATCAGTGAAGTGCTTCATGTGGCAGGAGAAAAAAGGCGG CACCGGCGCGTAAGCAGAATATGCGATACAGGATATATTCCGCTTCCTCGCTCAC
IR (inverted repeat)[2-11] [15-24] nt  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site [55-56] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:2-11;R:15-24;D:55-56
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 555
Name Mob_pS51B insolico
GenBank accession number YP_006961018
Family MOBP
Length 512 aa
UniProt ID E9RGW3
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 3.90E-17, Aligned region: 66..263
Note putative relaxase
Protein sequence [Download] MPDLSGCGTPFLRKERTMIVKFHPRGRGGGAGPVDYLLGKDRQRDGATVLQGKPEEVREL
IDASPYVKKYTSGVLSFAEADLPPGQREKLMASFERVLMPGLDKDQYSILWVEHADKGRL
ELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSGL
PKTKQEAAEAITRGLLTLASSGELKSRQDVTEALERSGFEVVRTTKSSISIADPDGGRNI
RLKGAIYEQSFNAGEGLRAAIESAEAEYRRDAESRIQRARAVCQSGTERKREENQRRHPR
PRAEYERGDGEKPAERTADCRADMAHHPDGVSAADRHEREHSVVAGAADNRQLHASSSAG
RYPGENDRPDVGSALSGEQRRPEVSYPAAGDANRSHPLRRDDMDPPETGVAEDDRAGKAV
AERIRAATAGLLAKAGRMGERLRGMAEHVWAYATGERGAERARVGLEHAGAEFKRAAAPF
VRELNAIEEKAVLEYQRQNELELTLRQKQKSF
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 945
Plasmid name pS51B
GenBank accession number NC_019242.1
Genome size 4854 bp
Coordinate of oriT  [Strand] 2269..2443 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Enterobacter cloacae [550]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU