oriTDB
The information of the oriT region
oriTDB accession number 100473
Name oriT_pSGSC3045-121  insolico
Sequence Completeness intact
oriT length 360 nt
oriT sequence GATTATCAAGAGTCACATGTGAATCGGCCATTTATTTTATTAGAGTCAACCTGGATTCAC CAACTTCATACAGGCGAATCTGTTATACCGAAATTAAGGATTCGAATCCAGATTCGAATC CTTAAATTTGTCTTAATTTAGTGGTCTGATTCGTAGATGAATCTGGATTCAACTCCTTTA CGATTCACTAAAGATTTGCATGTGAATCTAGTATCTATATCGGACACAGAATAACTATAA AAATATTAACCTAACATACTGAAATAAAAAGATAATCATGCAATATTAAATCTTGCGACG GGTGTGGGATTTTGATGTTAAGGAGCAGGCATACAGAAATATGTCAGCCAGGAAGAATTC
IR (inverted repeat)[280-287] [289-296] nt  (GCAATATT..AATCTTGC)
Location of nic site [305-306] nt
Conserved sequence flanking the
  nic site 		GACGGGTGT|GG
Note predicted by the oriTfinder
L:280-287;R:289-296;D:305-306
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 544
Name Putative relaxase of pSGSC3045-121 insolico
GenBank accession number YP_006957547
Family MOBF
Length 1770 aa
UniProt ID I3W4H4
PDB ID _
Pfam TrwC [PF08751.10], Evalue: 1.10E-71, Aligned region: 7..280
TraI [PF07057.10], Evalue: 3.20E-46, Aligned region: 1444..1565
AAA_30 [PF13604.5], Evalue: 3.10E-34, Aligned region: 970..1162
AAA_19 [PF13245.5], Evalue: 8.40E-10, Aligned region: 975..1111
Note putative relaxase
Protein sequence [Download] MLSISSIKGDAGYYSHEDNYYASGSLDSRWMGEGAEKLGLKGEVASADMDAVRQGRLPDG
SDLSRMVDGVNKHRSGYDLTFSAPKSVSVMALVGEDRRFIEAHNRAVAVVMKEVEQLVSA
RITQEGKTETVLTGSMVAALYNHDTSRDLDPQVHTHALVFNATFADEKWRSLASDTRMKT
GFSENLYATKIALGNLYRSALREDIESMGFETVAAGKHGLWELKDVPVDIFSSRSQAIRE
AAGPDASAKSRDVAALDTRQAKAWADPDLLKADWRRRLTDEKFDIGHYISQAQARVEITG
PVVAGQGGMRAPGQPGIASSGEAADELVQKAVSDTISALSDKKVQFTWSEMLAGTVNRLP
STPGLFELARAGIEAAIEGLRLIPLDREKGIFTSDIHLLNELSVHQLARTAVAEQTVLVF
PERAQERDIPAGDAVSVLSQDKSPVAILSGRGGAQTLRERTEDVAMMARSQGREVMVIAA
DGRSGQFLSESPHLAGHVMLRSQMNADTVLPVQGTVIVDRAERLSLKETVLLQEKALSAG
AQLIFMDTENRQGTGNALSVLKEADIPQYRFYGTQLPEVRLVSEADKRSRYSQLAQDYVR
LSAEGRDVVAQVTGAREQQQLTEAIRDTRREAGELGREQVTLRVLEPVWLDSKTRLQRDN
YRPGMVMEQWDAEKKTMTRHTIDRVAEATNSLVLQGEDGTRLTLKVTQLDGSWSLYRSRT
LEVSEGDRVRALGRELKGAIKAKEQFTVAGLENGAVRLRSGDRELRLPTERAVKLTHDYV
EGTGAGTNASRTVLAAVGPRGLNKQALNALAQSGSDIRIYTPLEGRQAARKVESVSAVQL
ASDQVRQSTGEANLDTAIQASRERLMSDAEQAVNLAIPRAQQGQVYLSELTLLAEAVKSG
QPLADVRAEIARQVDSGALIKLASVAGAGNRVLVPRIAYEMEKTIIRHIAEGKDAVQPLM
ALTPASVLSGLTTGQREATRTVLENTDRFMAIQGYAGVGKTTQFRAVMGALNTLSESVRP
QVIGLGPTHRAVHEMREAGVEARTLASFLSETRLAIQAGEIPDFRNVLFLTDESSMVGNR
DMAELYQLVAAGGGRMVSSGDTAQLQAISTGLPFRLVQQRSAIDTVVMQEIVRQTPALRP
AIESIIAGQVEISLRQVDDVTPQQVPRQPGAWVPDNSVMEIRAPKKDQEQDQEQGYLVAA
GEQTLTPEQLALVRTDIIEAIRDDWMGRTPEAQQQTLVVAELNADRHAINDAIHTARHEK
GDIGAEERTFTVLEPLRVPDNALRAAETFAEYAGAVAMMNERYWTVAEVDTQDAVVTLRN
ADGESVLISPQQNTAQDISLFTPRDLTISQGDRVRFTRSDTDRGYVANSLWEVAGFTDEG
AIRFRQGDQEKIVDPQAMTEDRHIDLAYALTVYGVQGASECFAIALTGTEGGRKRMVSLE
STYVTLSRAKEHVQVYTDNLAGWSADARHSNAGQTAHDLLHQKSDHESDTGNRLLATASR
LDKTALGRRVLAENGLEGETMARFIAAGKKYPSPYVALPAWTRHGKAAGALLTEIRIEDD
GMRVVLSDESRLRGGEDAQFAGLQASRNGQTLIADDAQTALRLAQENPESGVVIRLHGEE
RLLNAARLTGGRITEPDEVARTVRSVAEAESVAKVEDPITLPPDEQQKLAEAQEKAAREL
AEQARQELLPAVPGEESTRPDPLLSADEGRRLRDGTARGERELDEAIQEAVADGRGIRQQ
VREQMLRTEREWVVNVPEKDIELEKTLGGD
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 934
Plasmid name pSGSC3045-121
GenBank accession number NC_019125.1
Incompatibility group IncFII(Yp)
Genome size 108459 bp
Coordinate of oriT  [Strand] 79628..79987 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor insolico virulence associated protein
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica subsp. salamae SGSC3045 [59202]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU