oriTDB
The information of the oriT region
oriTDB accession number 100464
Name oriT_pSal8934b  insolico
Sequence Completeness intact
oriT length 259 nt
oriT sequence CTCACCACCAAAAGCACCACACCCCACGCAAAATTAAAATTTTTCTGATTTGTTTTTAGT AACAGTGAGTTATGTTCATAATAATGTAATTTAATTTATTTTAATGTATTAAATAGCGGT GCAGGCACGTCGCCGGCACCGCTATGACGACGCTATACAGGGGTAGTACTGACTATTTTT ATAAAAAACATTGCATTATATCAGGGGCGCTGCTAGCGTCGCTGTGCCTGTTTTTAAGTA ACACCCCTGGGGGCGCTGC
IR (inverted repeat)[115-128] [134-147] nt  (ATAGCGGTGCCGGC..GCCTGCACCGCTAT)
Location of nic site [241-242] nt
Conserved sequence flanking the
  nic site
GTGGGGTGT|GG
Note predicted by the oriTfinder
L:115-128;D:134-147;D:241-242
Visualization of oriT structure
1...5....10....15....20....25....30....35....40....45....50....55....60
1

CTCACCACCAAAAGCACCACACCCCACGCAAAATTAAAATTTTTCTGATTTGTTTTTAGT

61

AACAGTGAGTTATGTTCATAATAATGTAATTTAATTTATTTTAATGTATTAAATAGCGGT

121

GCAGGCACGTCGCCGGCACCGCTATGACGACGCTATACAGGGGTAGTACTGACTATTTTT

181

ATAAAAAACATTGCATTATATCAGGGGCGCTGCTAGCGTCGCTGTGCCTGTTTTTAAGTA

241

ACACCCCTGGGGGCGCTGC

Reference
 N/A