oriTDB
The information of the oriT region
oriTDB accession number 100460
Name oriT_pSPI12  insolico
Sequence Completeness intact
oriT length 88 nt
oriT sequence TCAGGGGGTTTCGGGGCGAAGCCCTGAACCAGTCACGTAGCGATAGCGGAGTGTATACTG ACTTAACCATGCGGCATCAGTGCGGATT
IR (inverted repeat)[8-17] [21-30] nt  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site [61-62] nt
Conserved sequence flanking the
  nic site 		CTGA|CTTA
Note predicted by the oriTfinder
L:8-17;R:21-30;D:61-62
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 531
Name MobA_pSPI12 insolico
GenBank accession number YP_006954659
Family MOBP
Length 517 aa
UniProt ID D5LN80
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 8.80E-19, Aligned region: 49..246
Note putative relaxase
Protein sequence [Download] MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSF
AEKELPPGGREKVMESFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQTGKRL
QPYYDRADRPRIDAWQTLVNHHYGLHDPNAPENRRTLTLPDNLPETKQALAESVTRGLEV
LYHAGEIKGRQDVIQALTEVGLEVVRVTRSSISIADPNGGRNIRLKGAFYEQYFTDGRGV
REKAERESRIYRENAERRIQQARRICKRGCDLKRDENQRRYSPVHNVDRGIAEKTPGRGE
RGDDAAPEGRVKAGREYGRDVTGDSLSPVYREWRDALVSWREDTDEPGRNQGTGRDIAET
EREDMGRGVCSGREKEISGPSVREISRGDALSGEGLDTTDGVIRNDRAGNTFAERLRAAA
TGLYAAAERMGERLRGIAEDVFAYATGQRDAERAGHAVESAGTALERADRTLEPVIQREL
EIREERLIQEREHALSLERERQLEIQERTLDGPSLSL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 921
Plasmid name pSPI12
GenBank accession number NC_019102.1
Incompatibility group ColRNAI
Genome size 4080 bp
Coordinate of oriT  [Strand] 990..1077 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica subsp. enterica serovar Pullorum S06004 [605]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU