oriTDB

The information of the oriT region

oriTDB accession number	100460
Name	oriT_pSPI12
Sequence Completeness	intact
oriT length	88 nt
oriT sequence	TCAGGGGGTTTCGGGGCGAAGCCCTGAACCAGTCACGTAGCGATAGCGGAGTGTATACTG ACTTAACCATGCGGCATCAGTGCGGATT
IR (inverted repeat)	[8-17] [21-30] nt (GTTTCGGGGC..GCCCTGAACC)
Location of nic site	[61-62] nt
Conserved sequence flanking the nic site	CTGA\|CTTA
Note	predicted by the oriTfinder
	L:8-17;R:21-30;D:61-62

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

TCAGGGGGTTTCGGGGCGAAGCCCTGAACCAGTCACGTAGCGATAGCGGAGTGTATACTG

61

ACTTAACCATGCGGCATCAGTGCGGATT

Reference
N/A

I. Information of Relaxase

ID	531
Name	MobA_pSPI12
GenBank accession number	YP_006954659
Family	MOB_P
Length	517 aa
UniProt ID	D5LN80
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 8.80E-19, Aligned region: 49..246
Note	putative relaxase
Protein sequence [Download]	MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSF AEKELPPGGREKVMESFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQTGKRL QPYYDRADRPRIDAWQTLVNHHYGLHDPNAPENRRTLTLPDNLPETKQALAESVTRGLEV LYHAGEIKGRQDVIQALTEVGLEVVRVTRSSISIADPNGGRNIRLKGAFYEQYFTDGRGV REKAERESRIYRENAERRIQQARRICKRGCDLKRDENQRRYSPVHNVDRGIAEKTPGRGE RGDDAAPEGRVKAGREYGRDVTGDSLSPVYREWRDALVSWREDTDEPGRNQGTGRDIAET EREDMGRGVCSGREKEISGPSVREISRGDALSGEGLDTTDGVIRNDRAGNTFAERLRAAA TGLYAAAERMGERLRGIAEDVFAYATGQRDAERAGHAVESAGTALERADRTLEPVIQREL EIREERLIQEREHALSLERERQLEIQERTLDGPSLSL

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	921
Plasmid name	pSPI12
GenBank accession number	NC_019102.1
Incompatibility group	ColRNAI
Genome size	4080 bp
Coordinate of oriT [Strand]	990..1077 [-]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Salmonella enterica subsp. enterica serovar Pullorum S06004 [605]

Reference
N/A