 oriTDB accession number | 100423 |
| Name | oriT_plasmid1_DO  |
Sequence Completeness  | intact |
| oriT length | 215 nt |
| oriT sequence | AAGCGGAAGTCGCAGGTGTGGACTGATCTTGCTGGCTGGTGTGGCAATAGCCACGCCAGC ACTTAACCCCCCGTATCTAACAGGGGGGTACAAATCGACAGGAAACAGTCAAAAAAACAT TAGAAAATCCTTTGGTTACAAGGGATTTACAAAATTTCAGCGTATGTCAAATGGGCTTTA AAAGTTGACATACGCCTTTTTGATTGGAGGGATTT |
| IR (inverted repeat) | [61-76] [80-95] nt (ACTTAACCCCCCGTAT..ACAGGGGGGTACAAAT) [123-134] [139-150] nt (GAAAATCCTTTG..CAAGGGATTTAC) |
| Location of nic site | [135-136] nt |
| Conserved sequence flanking the nic site | TGG|T |
| Note | predicted by the oriTfinder |
Visualization of oriT structure Reference| ID | 494 |
| Name | Pre_plasmid1_DO |
| GenBank accession number | YP_006377333 |
| Family | MOBV |
| Length | 420 aa |
| UniProt ID | Q3Y252 |
| PDB ID | _ |
| Pfam | Mob_Pre [PF01076.18], Evalue: 1.70E-73, Aligned region: 1..193 |
| Note | putative relaxase |
| Protein sequence [Download] | MSYAVCRMQKVKSAGLKGMQFHNQRERKSRTNDDIDHERTRENYDLKNDKNIDYNERVKE IIESQKTGTRKTRKDAVLVNELLVTSDRDFFEQLDPGEQKRFFEESYKLFSERYGKQNIA YATVHNDEQTPHMHLGVVPMRDGKLQGKNVFNRQELLWLQDKFPEHMKKQGFELKRGERG SDRKHIETAKFKKQTLEKEIDFLEKNLAVKKDEWTAYSDKVKSDLEVPAKRHMKSVEVPT GEKSMFGLGKEIMKTEKKPTKNVVISERDYKNLVTAARDNDRLKQHVRNLMSTDMAREYK KLSKEHGQVKEKYSGLVERFNENVNDYNELLEENKSLKSKISDLKRDVSLIYESTKEFLK ERTDGLKAFKNVFKGFVDKVKDKTAQFQEKHDLEPKKNEFELTHNREVKKERSRDQGMSL |
Reference| ID | 884 |
| Plasmid name | plasmid1_DO |
| GenBank accession number | NC_017961.1 |
| Genome size | 36262 bp |
| Coordinate of oriT [Strand] | 23823..24037 [+] |
| Drug resistance | tetracycline resistance |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Enterococcus faecium DO [333849] |
Reference| [1] Qin X et al (2012) Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes. BMC Microbiol. 0.59375. [PMID:22769602] |