oriTDB

The information of the oriT region

oriTDB accession number	100398
Name	oriT_BLNIAS_P1
Sequence Completeness	core
oriT length	32 nt
oriT sequence	ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT
IR (inverted repeat)	[1-8] [12-19] nt (ATGCAACC..GGTTGCAT)
Location of nic site	[28-29] nt
Conserved sequence flanking the nic site	TAAGTGCG\|CCCT
Note	predicted by the oriTfinder
	L:1-8;R:12-19;D:28-29

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT

Reference
N/A

I. Information of Relaxase

ID	469
Name	MobA_BLNIAS_P1
GenBank accession number	WP_014485224
Family	MOB_Q
Length	566 aa
UniProt ID	F8AUP8
PDB ID	_
Pfam	MobA_MobL [PF03389.14], Evalue: 1.30E-65, Aligned region: 17..254
Note	putative relaxase
Protein sequence [Download]	MAIYHLSVSNVSRASGSKATATLSYITGKRVHDERRGETYDYGRKERVLRVGTLLPEGAP AEFADPAVLFNAVELHETGRTARPAKKIVVALPREFTPRQRVQALEEYIRENLNADGYAA TYAIHEDREGNNPHAHILVANRQIDPATGGWARLKQRMEYVLDERGERVPLIDPETGRQK TDKRGRRQWKRTSVSLNPLDRKAKLKALRESWAKTCNARLDETARIDHRSLEDQGSDLEP TIHEGYAARAIERAGGVSERCEANREIRRSNGLLTAIRTELGRIFDRLGELFAAKIRQLR QRQARPEPAREPNWRYFEGDARRQLEADRADHTAAIRGKLMGAKADVRNREEWWRSHGTE EFEAAKQIIDVARAASREARDANVFKRGRLLRNAEQVAGEQSEKLRGAVPWLEDTDIPSD WDQANRFRMRATKAIHDHDMQPRTGLVDELERRLEQAERAEGEKPSPEQVKALALRMAEQ RERAAEDPTQDMNRPEPSGDEPLDLSEPEDLGEGGPFEERSAPRTKADLLREIRQRADRR TGQQEAEQRQIDPWQAQPPQRRGHGR

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	859
Plasmid name	BLNIAS_P1
GenBank accession number	NC_017220.1
Genome size	4233 bp
Coordinate of oriT [Strand]	2918..2949 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Bifidobacterium longum subsp. longum KACC 91563 [1035817]

Reference

[1] Ham JS et al (2011) Complete genome sequence of Bifidobacterium longum subsp longum KACC 91563. J Bacteriol. 193(18):5044. [PMID:21742881]