 oriTDB accession number | 100397 |
| Name | oriT_pUUH239.1  |
Sequence Completeness  | intact |
| oriT length | 180 nt |
| oriT sequence | TTAGCGGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTG GCTTATTATGTTGGCATGAGTGCGGTAATCAGGAAAGTGCTTCATGTGACAGAGGAAAAT GCAGCTGCGGGCGTAAGGCAGAAAATGGAAGTTCAGAGGATATGACGCCTCCTCGCTCAC |
| IR (inverted repeat) | [10-17] [21-28] nt (TTCGGGGC..GCCCTGAA) |
| Location of nic site | [61-62] nt |
| Conserved sequence flanking the nic site | CTGG|CTTA |
| Note | predicted by the oriTfinder |
Visualization of oriT structure Reference| ID | 468 |
| Name | Nuclease_pUUH239.1 |
| GenBank accession number | YP_005352162 |
| Family | MOBP |
| Length | 501 aa |
| UniProt ID | G7RUW6 |
| PDB ID | _ |
| Pfam | Relaxase [PF03432.13], Evalue: 4.90E-16, Aligned region: 48..246 |
| Note | putative relaxase |
| Protein sequence [Download] | MIVKFHPRGRGGGAGPVDYCWEKTAARGGDRAAGKTGGSPGAIDASPYAKKYTSGVLSFA EAELPPGQREQIMASFERVLMPGLDKDQYSILWVEHTDKGRLELNFLIPNTELLTGKRLQ PYYDRADRPRIDAWQTVVNGRLGLHDPNAPENRRLLVTPSALPETKLEAAQAITRGLLAL ASSGELKTREDVTGALTAAGFEVVRTTKNSISIADPDGGRNIRLKGAIYEQSFSAGEGLG AAIESAAAEYRRDAESRIQRARAVCKSGTERKREENQRRHQRPRAGYDRGDAVEPAERAA YGRPDVADHHPGLGTADRHEREHSVVAGAADHRELPDYPGAGADAGHAVGEEPRRAAVAL RGEETVLRQSEPESGSLRGGRELDGTGEEIAHDGTGKTVADRIRAATSGLLAKAGRVGER LRGMAEDVWSYATGERGAERARHALESAGGELEQAVTAFEPVVQRHEMAVAAERAYEQKQ HEKELAETRSRQRSYDGPTLG |
Reference| ID | 858 |
| Plasmid name | pUUH239.1 |
| GenBank accession number | NC_016979.1 |
| Genome size | 5247 bp |
| Coordinate of oriT [Strand] | 4957..5136 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Klebsiella pneumoniae U-0608239 [573] |
Reference| [1] Sandegren L et al (2012) Transfer of an Escherichia coli ST131 multiresistance cassette has created a Klebsiella pneumoniae-specific plasmid associated with a major nosocomial outbreak. J Antimicrob Chemother. 67(1):74-83. [PMID:21990049] |