oriTDB

The information of the oriT region

oriTDB accession number	100389
Name	oriT_pSTMDT12_S
Sequence Completeness	intact
oriT length	160 nt
oriT sequence	TGGCCAGCCGATCCGCCGCCTTGTTGCTCCCCTTAACCATCTTGACACCCCATTGTTAAT GTGCTGTCTCGTAGGCTATCATGGAGGCACAGCGGCGGCAATCCCGACCCTACTTTGTAG GGGAGGGCGCACTTACCGGTTTCTCTTCGAGAAACTGGCC
IR (inverted repeat)	IR1: [3-12] [16-25] nt (CCAGTTTCTC..GAGAAACCGG) IR2: [39-44] [48-53] nt (CCCTAC..GTAGGG)
Location of nic site	[33-34] nt
Conserved sequence flanking the nic site	TAAGTGCG\|CCCT
Note	predicted by the oriTfinder
	L:3-12;R:16-25;L:39-44;R:48-53;D:33-34

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

TGGCCAGCCGATCCGCCGCCTTGTTGCTCCCCTTAACCATCTTGACACCCCATTGTTAAT

61

GTGCTGTCTCGTAGGCTATCATGGAGGCACAGCGGCGGCAATCCCGACCCTACTTTGTAG

121

GGGAGGGCGCACTTACCGGTTTCTCTTCGAGAAACTGGCC

Reference
N/A

I. Information of Relaxase

ID	460
Name	MobA_pSTMDT12_S
GenBank accession number	WP_001395566
Family	MOB_Q
Length	709 aa
UniProt ID	C7FHN5
PDB ID	_
Pfam	RepB_primase [PF16793.4], Evalue: 1.80E-47, Aligned region: 396..643 MobA_MobL [PF03389.14], Evalue: 2.00E-33, Aligned region: 13..218
Note	putative relaxase
Protein sequence [Download]	MAIYHLTAKTGSRSGGQSARAKADYIQREGKYARDMDEVLHAESGHMPEFVERPADYWDA ADLYERANGRLFKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPH CHLMISERINDGIERPAAQWFKRYNGKTPEKGGAQKTEALKPKAWLEQTREAWADHANRA LERAGHDARIDHRTLEAQGIERLPGVHLGPNVVEMEGRGIRTDRADVALNIDTANAQIID LQEYREAIDHERNRQSEEIQRHQRVSGADRTAGPEHGDTGRRSPAGHEPDPAGQRGAGGG VAESPAPDRGGMGGAGQRVAGGSRRGEQRRAERPERVAGVALEAMANRDAGFHDAYGGAA DRIVALARPDATDNRGRLDLAALGGPMKNDRTLQAIGRQLKAMGCERFDIGVRDATTGQM MNREWSAAEVLQNTPWLKRMNAQGNDVYIRPAEQERHGLVLVDDLSEFDLDDMKAEGREP ALVVETSPKNYQAWVKVADAAGGELRGQIARTLASEYDADPASADSRHYGRLAGFTNRKD KHTTRAGYQPWVLLRESKGKTATAGPALVQQAGQQIEQAQRQQEKARRLASLELPERQLS RHRRTALDEYRSEMAGLVKRFGDDLSKCDFIAAQKLASRGRSAEEIGKAMAEASPALAER KPGHEADYIERTVSKVMGLPSVQLARAELARAPAPRQRGMDRGGPDFSM

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	850
Plasmid name	pSTMDT12_S
GenBank accession number	NC_016862.1
Incompatibility group	IncQ1
Genome size	8670 bp
Coordinate of oriT [Strand]	6243..6402 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 [718274]

Reference

[1] Izumiya H et al (2011) Whole-genome analysis of Salmonella enterica serovar Typhimurium T000240 reveals the acquisition of a genomic island involved in multidrug resistance via IS1 derivatives on the chromosome. Antimicrob Agents Chemother. 55(2):623-30. [PMID:21098248]