oriTDB

The information of the oriT region

oriTDB accession number	100383
Name	oriT_pSS-03
Sequence Completeness	core
oriT length	41 nt
oriT sequence	CACTTTATGGATATAAAGTATAGTGTGCTATACTTTACATG
IR (inverted repeat)	[2-8] [13-19] nt (ACTTTAT..ATAAAGT)
Location of nic site	[27-28] nt
Conserved sequence flanking the nic site	GTG\|CTA
Note	predicted by the oriTfinder
	L:2-8;R:13-19;D:27-28

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

CACTTTATGGATATAAAGTATAGTGTGCTATACTTTACATG

Reference
N/A

I. Information of Relaxase

ID	454
Name	Mob_pSS-03
GenBank accession number	YP_004888092
Family	MOB_V
Length	376 aa
UniProt ID	_
PDB ID	_
Pfam	Mob_Pre [PF01076.18], Evalue: 1.40E-69, Aligned region: 23..214
Note	putative relaxase
Protein sequence [Download]	MDIKYSVLYFTWKLTEIRGRVFVSFAVVRMQKMKSPDLKGMQFHNQRERESRTNPDIDPD REHLNYDLLHQEKIDYNQQVKAIIESQKVSERKTRKDAVLVNELLVTSDRKFFDGLDPAE QKRFFEESHKLFSERYGKQNIAYATVHNDEKTPHMHLGVVPMRDGKLQGKNVFNRQELQW MQEEFPKHMQSVGFEVERGIASDRKHIEMSRFKALTLNEEIKTLEKETEALRNALTASKK VDELQVTKPSLFDRNHVKLPVEDFEALKARAKATEAIERTIEAHEKRFDDMVDNVIDSDR KLDQEKRKTAQLQKENNGLKKENLDLQKENKTLKSQLNVLMEFAKSQLEKFKEWQKERQQ EKENNIARKRDQELER

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	844
Plasmid name	pSS-03
GenBank accession number	NC_016054.1
Genome size	7122 bp
Coordinate of oriT [Strand]	5688..5728 [-]
Drug resistance	resistance to chloramphenicol and florfenicol; resistance to macrolides
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Staphylococcus arlettae 2-144 [29378]

Reference
N/A