oriTDB

The information of the oriT region

oriTDB accession number	100378
Name	oriT_pDRPIS7493
Sequence Completeness	core
oriT length	33 nt
oriT sequence	GCACTTTTACGAAGTAAAGTATAGTGCGTTATA
IR (inverted repeat)	[3-10] [14-20] nt (ACTTTTAC..GTAAAGT)
Location of nic site	[28-29] nt
Conserved sequence flanking the nic site	GCG\|TTA
Note	predicted by the oriTfinder
	L:3-10;R:14-20;D:28-29

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GCACTTTTACGAAGTAAAGTATAGTGCGTTATA

Reference
N/A

I. Information of Relaxase

ID	449
Name	Putative relaxase of pDRPIS7493
GenBank accession number	WP_000121181
Family	MOB_V
Length	500 aa
UniProt ID	G0ID35
PDB ID	_
Pfam	Mob_Pre [PF01076.18], Evalue: 2.60E-71, Aligned region: 1..194
Note	putative relaxase
Protein sequence [Download]	MSYMVARMQKMKVGNLGGAYKHNERIFEKHSNKDIDTSRSHLNYELTDRDRSVSYERQIK DYVNENKSSKRGIRKDAVLCDEWIITSDKDFFEKLGQEQTRKFFETAKNYFAENYGETNV AYASVHLDESTPHMHLGIVPMRNGKLSSKVMFNREELKHIQEDLPKYMNEHGFELQRGKR DSKEQHLSVADYKEKMGREALNQELLDLGAPKYWHTEERRPATMSEIQDYEDIGSLFADS DVTFNIREATLEERFKWLDTHRNDLRADLGRLEGVLEKKIDEYGKIDSEASERLSELSEV NSEVNSRQEEIKGLKSDSKRLSDDVVRLERAHREKTQLLVEQSSNLSKISYRDLDRRRVA KELQEELENATPKLFGDGFNFTSDFVGRLKTFVSDVVEKLEQAVNQNELLRNALAGMKEA KSRLENSLSHAEWKNQQLETENKALKLENRELKVSKNLLDDLSEVITEKEVTSLNKRLEN LRETRELSRKRHEPTKGRSI

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	839
Plasmid name	pDRPIS7493
GenBank accession number	NC_015876.1
Genome size	4727 bp
Coordinate of oriT [Strand]	4283..4315 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Streptococcus pseudopneumoniae IS7493 [1054460]

Reference

[1] Shahinas D et al (2011) Whole-genome sequence of Streptococcus pseudopneumoniae isolate IS7493. J Bacteriol. 193(21):6102-3. [PMID:21994930]