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oriT
Relaxosome
T4CP
Plasmid&Host
The information of the
oriT
region
oriT
DB accession number
100372
Name
oriT
_p157F-NC1
Sequence Completeness
core
oriT
length
35 nt
oriT
sequence
TGAATGTTACCACCGGTAACATGTAAGTGCGCCCT
IR (inverted repeat)
[4-11] [15-22] nt
(ATGTTACC..GGTAACAT)
Location of
nic
site
[31-32] nt
Conserved sequence flanking the
nic
site
TAAGTGCG|CCCT
Note
predicted by the
oriT
finder
L:4-11;R:15-22;D:31-32
Visualization of
oriT
structure
1
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5
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10
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15
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20
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.
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25
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30
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35
.
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40
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45
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50
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55
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60
1
T
G
A
A
T
G
T
T
A
C
C
A
C
C
G
G
T
A
A
C
A
T
G
T
A
A
G
T
G
C
G
C
C
C
T
Reference
N/A
I. Information of Relaxase
ID
443
Name
MobA_p157F-NC1
GenBank accession number
WP_012477134
Family
MOB
Q
Length
370 aa
UniProt ID
E8MXD2
PDB ID
_
Pfam
MobA_MobL [PF03389.14]
, Evalue: 2.50E-56, Aligned region: 1..224
Note
putative relaxase
Protein sequence
[Download]
MRDERTGEAFNGFGRRERVEHVCTMLPEGAPGEYLDPERLFNAVEMAEKRSDARPAKKIM
VALPREFDARERFRALEDFISWNITANGYACTYAIHTDKDGRNPHAHILVANRRIDPKTG
RWAAKSRSEFALDANGRRIPVIDPDTGRQKIGARNRKVWKRVNVSNNPLDSKEFLERLRR
EWADSCNALLPGYAVIDHRSFKARGIERIPTIHEGYASREMEKRGGRGDLCEENRRIQAL
NRLLDALRAMIGRLSDQAQGILTAVKRRQRPSGAPQAPSSPEPAERPQERPQARETPPQA
PQEPPKPIRTKKALTDRFKTRLDERLAENERKQAEKQAEPDMEETWDLSDPADPLNIGMG
WGTGGHGLGL
Reference
N/A
II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A
N/A
Information of plasmid
ID
833
Plasmid name
p157F-NC1
GenBank accession number
NC_015053.1
Genome size
4895 bp
Coordinate of
oriT
[Strand]
4618..4652
[-]
Drug resistance
_
Heavy-metal resistance
_
Virulence factor
_
Xenobiotic degradation
_
Host bacterium [NCBI Taxonomy ID]
Bifidobacterium longum
subsp. infantis 157F [
565040
]
Reference
[1] Fukuda S
et al
(2011) Bifidobacteria can protect from enteropathogenic infection through production of acetate.
Nature
. 469(7331):543-7. [
PMID:21270894
]