oriTDB

The information of the oriT region

oriTDB accession number	100350
Name	oriT_SAP108B
Sequence Completeness	intact
oriT length	238 nt
oriT sequence	AGTGGCTAGCAATTAGCCACTATTTTTTCGTCAGAAAAAATCCTAAGGGGCTTGGGGATT ATCCCCAACAAGCAGGCGACGCTACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA CCACTTAACGACTTGATGAATCTTACTTTATCATATAAAGTAAGATGTAAGAAAGGCGTT ATCTTTCGAAGAAAGCGTGGTGGGATGTATGAGCGAACAAAATACATTTGTGGCTAGC
IR (inverted repeat)	IR1: [52-59] [61-68] nt (TTGGGGAT..ATCCCCAA) IR2: [94-98] [104-108] nt (TGGCT..AGCCA)
Location of nic site	[115-116] nt
Conserved sequence flanking the nic site	TGCTTG\|CCA
Note	predicted by the oriTfinder
	L:52-59;R:61-68;L:94-98;R:104-108;D:115-116

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

AGTGGCTAGCAATTAGCCACTATTTTTTCGTCAGAAAAAATCCTAAGGGGCTTGGGGATT

61

ATCCCCAACAAGCAGGCGACGCTACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA

121

CCACTTAACGACTTGATGAATCTTACTTTATCATATAAAGTAAGATGTAAGAAAGGCGTT

181

ATCTTTCGAAGAAAGCGTGGTGGGATGTATGAGCGAACAAAATACATTTGTGGCTAGC

Reference
N/A

I. Information of Relaxase

ID	421
Name	Rlx_SAP108B
GenBank accession number	YP_006939270
Family	MOB_P
Length	335 aa
UniProt ID	D2JCJ6
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 3.80E-80, Aligned region: 8..242
Note	putative relaxase
Protein sequence [Download]	MATTKISATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQ SFKPDEVTSEQCNQLGLELAEKLAPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNN KQALRNVRDFNDEVCRSHSLSVPDKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAI DQSQATNMDEFQMHLKQHGVEIERVTPKSITYRHLAEDKKVRGRRLGEDYNKGGIEDGFE RQIQRQQQERESDTDFQPKRPTSNRDESTERDTGVTQSDWDKFAQDTNELERRRQAAESA RLADEKARRDREERERAKQASRRIINNDRDHGLEL

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	811
Plasmid name	SAP108B
GenBank accession number	NC_013390.1
Genome size	6206 bp
Coordinate of oriT [Strand]	1956..2193 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Staphylococcus epidermidis SK85 [1282]

Reference
N/A