oriTDB
The information of the oriT region
oriTDB accession number 100347
Name oriT_SAP106B  insolico
Sequence Completeness intact
oriT length 238 nt
oriT sequence AGTGGCTAGCATTTTGCCACTCATTTTTTGCGTTAGCAAAAACATAAAGGGTATGGGATA TAATCCCATCAAGTACGGCGTGCTAGAACGAAGTGGATAGCAAAGCCAATGCTTGCCAAA CCACATAACGACTTGATAAATTTTGCTTTACCCTGTAAAGTAAAATTATATTAAGGAGTT ATCTTTCGTAGAAAGCGTGGTGGGATGTATGAGCGAACAAAACACATTTGTGGCTAGC
IR (inverted repeat)IR1: [1-8] [14-21] nt  (AGTGGCTA..TTGCCACT)
IR2: [25-31] [36-42] nt  (TTTTTGC..GCAAAAA)
IR3: [94-98] [104-108] nt  (TGGAT..AGCCA)
Location of nic site [115-116] nt
Conserved sequence flanking the
  nic site 		TGCTTG|CCA
Note predicted by the oriTfinder
L:1-8;R:14-21;L:25-31;R:36-42;L:94-98;R:104-108;D:115-116
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 418
Name Rlx_SAP106B insolico
GenBank accession number YP_006939092
Family MOBP
Length 336 aa
UniProt ID D2JCA3
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 2.50E-83, Aligned region: 8..242
Note putative relaxase
Protein sequence [Download] MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQ
SFKPGEVTPEQCNQLGLALAEKLAPNHQVAVYTHADTDHVHNHIVINSIDLETGKKFNNN
KQALRNVRNFNDEVCMEHGLSVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAI
DQSQATNMDEFKDHLNQHGIEIERVTSKSITYRHLAEDKKVRGRKLGEDYNKGGIEDGFE
RQIQRRRQQERDSDTECQPKRPTSSRDESTERDTGVTQSDWDQFAQDTNELERSRQAAES
ARLADEKARRDREERERAKQASRRIINNDRDHGLEL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 808
Plasmid name SAP106B
GenBank accession number NC_013380.1
Genome size 8435 bp
Coordinate of oriT  [Strand] 882..1119 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Staphylococcus epidermidis SK939 [1282]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU