oriTDB

The information of the oriT region

oriTDB accession number	100347
Name	oriT_SAP106B
Sequence Completeness	intact
oriT length	238 nt
oriT sequence	AGTGGCTAGCATTTTGCCACTCATTTTTTGCGTTAGCAAAAACATAAAGGGTATGGGATA TAATCCCATCAAGTACGGCGTGCTAGAACGAAGTGGATAGCAAAGCCAATGCTTGCCAAA CCACATAACGACTTGATAAATTTTGCTTTACCCTGTAAAGTAAAATTATATTAAGGAGTT ATCTTTCGTAGAAAGCGTGGTGGGATGTATGAGCGAACAAAACACATTTGTGGCTAGC
IR (inverted repeat)	IR1: [1-8] [14-21] nt (AGTGGCTA..TTGCCACT) IR2: [25-31] [36-42] nt (TTTTTGC..GCAAAAA) IR3: [94-98] [104-108] nt (TGGAT..AGCCA)
Location of nic site	[115-116] nt
Conserved sequence flanking the nic site	TGCTTG\|CCA
Note	predicted by the oriTfinder
	L:1-8;R:14-21;L:25-31;R:36-42;L:94-98;R:104-108;D:115-116

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

AGTGGCTAGCATTTTGCCACTCATTTTTTGCGTTAGCAAAAACATAAAGGGTATGGGATA

61

TAATCCCATCAAGTACGGCGTGCTAGAACGAAGTGGATAGCAAAGCCAATGCTTGCCAAA

121

CCACATAACGACTTGATAAATTTTGCTTTACCCTGTAAAGTAAAATTATATTAAGGAGTT

181

ATCTTTCGTAGAAAGCGTGGTGGGATGTATGAGCGAACAAAACACATTTGTGGCTAGC

Reference
N/A

I. Information of Relaxase

ID	418
Name	Rlx_SAP106B
GenBank accession number	YP_006939092
Family	MOB_P
Length	336 aa
UniProt ID	D2JCA3
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 2.50E-83, Aligned region: 8..242
Note	putative relaxase
Protein sequence [Download]	MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQ SFKPGEVTPEQCNQLGLALAEKLAPNHQVAVYTHADTDHVHNHIVINSIDLETGKKFNNN KQALRNVRNFNDEVCMEHGLSVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAI DQSQATNMDEFKDHLNQHGIEIERVTSKSITYRHLAEDKKVRGRKLGEDYNKGGIEDGFE RQIQRRRQQERDSDTECQPKRPTSSRDESTERDTGVTQSDWDQFAQDTNELERSRQAAES ARLADEKARRDREERERAKQASRRIINNDRDHGLEL

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	808
Plasmid name	SAP106B
GenBank accession number	NC_013380.1
Genome size	8435 bp
Coordinate of oriT [Strand]	882..1119 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Staphylococcus epidermidis SK939 [1282]

Reference
N/A