oriTDB

The information of the oriT region

oriTDB accession number	100346
Name	oriT_SAP016A
Sequence Completeness	intact
oriT length	238 nt
oriT sequence	AGTGGCTAGCATTTTGCCACTCATTTTTTGCTTTAGCAAAAACATAAGGGGCTTGGGGAT TATCCCCAACAAGCCGGCGTCGCTACCACGTTAGTGGCTAGCAAAGCCAGTGCTTGCCAA ATCACTTTATTACTTGATGAAATTTAGATTATCATATAATCTAAATTTATATTAAGTAAT ATCTTTCGTAGAAAGCGTGGTGGGATGTATGAGCGAACAAAAACATTTTGTGGCTAGC
IR (inverted repeat)	IR1: [53-60] [62-69] nt (TTGGGGAT..ATCCCCAA) IR2: [95-99] [105-109] nt (TGGCT..AGCCA)
Location of nic site	[116-117] nt
Conserved sequence flanking the nic site	TGCTTG\|CCA
Note	predicted by the oriTfinder
	L:53-60;R:62-69;L:95-99;R:105-109;D:116-117

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

AGTGGCTAGCATTTTGCCACTCATTTTTTGCTTTAGCAAAAACATAAGGGGCTTGGGGAT

61

TATCCCCAACAAGCCGGCGTCGCTACCACGTTAGTGGCTAGCAAAGCCAGTGCTTGCCAA

121

ATCACTTTATTACTTGATGAAATTTAGATTATCATATAATCTAAATTTATATTAAGTAAT

181

ATCTTTCGTAGAAAGCGTGGTGGGATGTATGAGCGAACAAAAACATTTTGTGGCTAGC

Reference
N/A

I. Information of Relaxase

ID	417
Name	Mob_SAP016A
GenBank accession number	YP_006938839
Family	MOB_P
Length	335 aa
UniProt ID	D2J6F0
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 1.30E-80, Aligned region: 8..242
Note	putative relaxase
Protein sequence [Download]	MATTKLSATKSTSRAINYAEKRAEEKSGLNCDIDYAKSSFKVTRELYGKTGGNEGHVIIQ SFKPGEVTPEQCNQLGLALAEKFAPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNN KQALRDLRDFNDNVCREHGLSVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAI DQSKATNMDEFKDHLSQYGIEIARVTPKSITYRHLAEDKKVRGRRLGEDYNKGGIEDGFE RQIQRQQQEREDDNDIQPKRPTSNRDEPTQRDTGVTQSDWDKFAQDTNELERRRQAAESA RLADEKARRDREERERAEQASRTIIDNDRDYGLEL

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	807
Plasmid name	SAP016A
GenBank accession number	NC_013372.1
Genome size	43807 bp
Coordinate of oriT [Strand]	23350..23587 [+]
Drug resistance	resistance to teicoplanin and bleomycin
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Staphylococcus epidermidis CDC8 [1282]

Reference
N/A