oriTDB
The information of the oriT region
oriTDB accession number 100334
Name oriT_pAph01  insolico
Sequence Completeness intact
oriT length 107 nt
oriT sequence CCGTCCGGCCTCGCAGAGCAGGACGCCCGTTGAGCACGCAGTGCGAATAAGGCGCAGTGA AGAAGGACAAGCCGCTTGCGGGTGGGCCTACTTCACCTATCCTGCCC
IR (inverted repeat)[57-75] [78-96] nt  (GTGAAGAAGGACAAGCCGC..GCGGGTGGGCCTACTTCAC)
Location of nic site [104-105] nt
Conserved sequence flanking the
  nic site 		TATCCTG|C
Note predicted by the oriTfinder
L:57-75;R:78-96;D:104-105
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 405
Name TraI_pAph01 insolico
GenBank accession number WP_012806752
Family MOBP
Length 741 aa
UniProt ID C7RVW0
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 7.70E-57, Aligned region: 12..252
Note putative relaxase
Protein sequence [Download] MIAKHVPMKSVRKSDFAGLVKYLIDEQQKRERVTGVSVTNCHAERPDAAILEVLNTQAQN
RRAESDKTYHLIVSFRAGEQPDAATLQAIEWRICEGLGYGEHQRVSTVHQDTDNLHLHIA
INKIHPTRYTIHDPYRDHKTLGELCEKLESEYGLQRDNHQAQKRGAENRADDMERHAGIE
SLLGWIRRECLEQIQGAQSWAELHQALRDNGLEIRERGNGLVIADAAGTMVKASSVAREL
SLAKLEARFGRFEPSPERLANQADQPTRQYQPRPFRMRVDTVELYARYRAEQQGHGAART
VEWTQARDRKSRLIEAAKRSGRLKRAAIKLMGGPGLSRKALYALTSRTLKDELNQIHQQY
RKERQAIHDKYRRQAWADWLRRKATEGDSEALAALRAREAALGLQGNTIAGNGGQQKGQG
VEAQQDGVTKKGTLIYRVGASAIRDDGDKLQVSRGATPDGLEAALRMAMARYGDRITVKG
SAEFKESIAHAAATADLPITFDDAALEQRRQTLLNEITAKENRHDASARTDRGRADRGRI
RHPGPNATHPTGAGRRVGSAAAPRATRKPNVGRVGRQPPPEAQNRLRSLSQLGLVRIASG
SEVLLPGHVPDHLEHPGAQPDDGLRRGLARPGVAAVAGRAGPAPASSALAAVDKYIAERE
EKRLAIFDIPKHRRYNENDSGAAIYAGSRQIDGHSLALLKRGEEVIVLPINEATARRMQR
LALGDPVTVTQGSIKMPGRSR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 795
Plasmid name pAph01
GenBank accession number NC_013193.1
Genome size 167595 bp
Coordinate of oriT  [Strand] 73854..73960 [-]
Drug resistance _
Heavy-metal resistance insolico copper resistance
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Accumulibacter phosphatis clade IIA str. UW-1 [522306]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU