oriTDB
The information of the oriT region
oriTDB accession number 100329
Name oriT_pKKS825  insolico
Sequence Completeness core
oriT length 42 nt
oriT sequence CACTTTATGAATATAAAGTATAGTGTGTTTATACTTTACATG
IR (inverted repeat)[2-8] [13-19] nt  (ACTTTAT..ATAAAGT)
Location of nic site [27-28] nt
Conserved sequence flanking the
  nic site 		GTG|TTA
Note predicted by the oriTfinder
L:2-8;R:13-19;D:27-28
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 400
Name Mob_pKKS825 insolico
GenBank accession number YP_003084337
Family MOBV
Length 409 aa
UniProt ID C7C2U8
PDB ID _
Pfam Mob_Pre [PF01076.18], Evalue: 1.10E-71, Aligned region: 1..193
Note putative relaxase
Protein sequence [Download] MSMIAARMQKLKAGNLTGIGNHNQRKGQNHSNQEIDPNRSHLNYELVNRTEHYQKDIQTF
IDEKKISTRAVRSDAVLVNEWIITSDRTFFNGLTEQETKEFFEAAKEYFSEKFGEDNIRY
ATVHVDETTPHMHMGIVPFDSEGKLSAKRVFNRQTLRDIQEELPTYLQEAKFDIERGQKG
SERKNLTVPEFKEMKREQKEVQQETEKMREEFRAYVTDRKITVSLDDIKATIEREEIKIP
SGEKFLGIDIPKKVERETGNVILSKKDFDKMQDFNTYIKKSESRFLNLLDTDLYQENKAL
KKEIKVQKSTNHTNIEDYNQLVREYNTLSGENDRLKSRISDLKKEVRIIYNTVKSFLKER
TSEIQAFKSMFKALTDDISLSSKDNQLDSQFKKEFDKEHTQKRTRGRSR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 790
Plasmid name pKKS825
GenBank accession number NC_013034.2
Genome size 14362 bp
Coordinate of oriT  [Strand] 9293..9334 [+]
Drug resistance insolico resistance to streptogramin A antibiotics, lincosamides, pleuromutilins, kanamycin, neomycin, tetracyclines, andtrimethoprim
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Staphylococcus aureus subsp. aureus ST398 [523796]
Reference
[1] Kadlec K et al (2009) Novel ABC transporter gene, vga(C), located on a multiresistance plasmid from a porcine methicillin-resistant Staphylococcus aureus ST398 strain. Antimicrob Agents Chemother. 53(8):3589-91. [PMID:19470508]

Microbial Bioinformatics Group in MML, SJTU