oriTDB
The information of the oriT region
oriTDB accession number 100321
Name oriT1_pO26-Vir  insolico
Sequence Completeness intact
oriT length 92 nt
oriT sequence CGGGGTGTCGGGGCTAAGCCCTGACCAGGTGGTAATCGTATAGCCGTGCGTGCGCGGTTA TACGATTACACATCCTGTCCCGTTTTTCAGGC
IR (inverted repeat)IR1: [7-15] [17-25] nt  (GTCGGGGCT..AGCCCTGAC)
IR2: [32-49] [52-69] nt  (GTAATCGTATAGCCGTGC..GCGCGGTTATACGATTAC)
Location of nic site [77-78] nt
Conserved sequence flanking the
  nic site 		CATCCTG|T
Note predicted by the oriTfinder
L:7-15;R:17-25;L:32-49;R:52-69;D:77-78
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 392
Name Relaxase_pO26-Vir insolico
GenBank accession number YP_002756615
Family MOBP
Length 906 aa
UniProt ID C1J8G4
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.20E-49, Aligned region: 61..315
Note putative relaxase
Protein sequence [Download] MNAIIPKKRRDGKSSFEDLIAYTSVRDDVPEDELRPDTEMKAEIPHRNRFRRLVDYATRL
RNEKFVSLIDVMKDGSQWVNFYGVTCFHNCLSLESAAEEMQKAADLAHFSKDDTDPVFHY
ILSWPAHESPRSEQLFDCVRHTLKSLELSKHQYVAAVHTDTDNLHVHVAVNRVHPETGYI
NCLPWSQEKLSRACRELEIKHGFAPDNGCFVHAPGNRIVRKTALVRERRNAWRRGKKQTF
REYIVQMSIAGLREEPAQDWLSLHKRLASDGLYITMQEGELVVKDGWDRAREGVALSSFG
PLWTAEKLGRKLGEYQPVPTDIFSQVGTPGRYDPEAINVDIRPEKVAETESLKQYACRHF
AERLPEMARNGELESCLDVHRTLATAGLWMGIQHGHLVLHDGFDKQQTPVRADSVWPLMT
LDYMQDLDGGWQPVPKDIFTQVIPGERFRGRNLGTQAVSDYEWYRMRMGTGPQGAIKREL
FSDKESLWGYGLIQCRSLIEEMIADGDFSWQACHEMFARKGLMLQKQHHGLVIVDAFNHE
LTPVKASSIHPDLTLSRAEPQAGPFEIAAADIFERVKPECRYNPELAASDEVEPGFRRDP
EIRRERREARAAAREDLRARYLAWKEHWRKPDLRYGERLREIHAACRRRKAYIRVQFRDP
QLRKLHYHIAEVQLMQALIRLKESVKEERLSLIAEGKWYPLSYRQWVEQQAAQGDRAAVS
QLRGWDYRDRRSRNKDKRRTTNVDRCVVLCEPGGTPLFNNVAKLEARLQKNGSVHFRDTR
TGKNVCTDYGDRVVFYHHTDRNELAEKLDLIAPVLFSRNGKLGFEPEGSYQQFNDVFAEM
VAWHNAAGITGNGHFTITRPDVDLHRQRSEQYYREYIRQQTRLSESHDDNYTLRQEKTWE
PPSPGM
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 783
Plasmid name pO26-Vir
GenBank accession number NC_012487.1
Incompatibility group IncB/O/K/Z
Genome size 168100 bp
Coordinate of oriT  [Strand] 68493..68584 [+]; 150410..150495 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor insolico virulence region: toxB gene (positions 39,589–49,089), the serine protease gene (espP) (positions 57,774–61,676), the catalase-peroxidase gene (katP) (positions 164,088–166,298), and the hemolysin (hly) gene cluster (positions 12,066–19,192)
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Escherichia coli H30 [562]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU