oriTDB
The information of the oriT region
oriTDB accession number 100308
Name oriT_pEC01  insolico
Sequence Completeness intact
oriT length 175 nt
oriT sequence GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAC TATGTTGGCACGAATGCGGATGTCAGTGAAGTGCTTCATGTGGAAGGAGAAAAAATACGG CACCGGCGCGTCAGCAGAATATGCGATACAGGATATATTCCGCTTCCTCGCTCAC
IR (inverted repeat)[2-11] [15-24] nt  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site [55-56] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:2-11;R:15-24;D:55-56
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 379
Name MobA_pEC01 insolico
GenBank accession number YP_002290990
Family MOBP
Length 500 aa
UniProt ID Q762E0
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 2.20E-10, Aligned region: 49..189
Note putative relaxase
Protein sequence [Download] MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYVKKYTSGVLSF
AEADLPPGQREKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGRRL
QPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSGLPKTKQEAAEAITRGLLT
LASSGELKSPSGMSLTLFEGAGFLRVVRTTKSSIKHCRPGRGANIRLKGAIYEQSFNAGE
GLRAAIESAAAEYRRDAESRIQRARAVCQSGTERKREENQRRHPRPRAEYERGDGEKPAE
RTADCRADMAHHPDGVSAADRHEREHSVVAGAADNRQLHASSSAGRYPGENDRPDVGSAL
SGEQRRPEVSYPAAGDANRSHPLRRDDMDPPETGVAENDRAGKAVAERIRAATAGLLAKA
GRMGERLRGMAEHVWAYATGERGAERARVGLEHAGAEFKRAAAPLVRELNATEFRQRENE
YQKTLELERQPQKTYRGPTL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 770
Plasmid name pEC01
GenBank accession number NC_011404.1
Genome size 5002 bp
Coordinate of oriT  [Strand] 43..217 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Enterobacter cloacae IFO 3320 [550]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU