oriTDB

The information of the oriT region

oriTDB accession number	100294
Name	oriT_p6043B
Sequence Completeness	core
oriT length	32 nt
oriT sequence	ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT
IR (inverted repeat)	[1-8] [12-19] nt (ATGCAACC..GGTTGCAT)
Location of nic site	[28-29] nt
Conserved sequence flanking the nic site	TAAGTGCG\|CCCT
Note	predicted by the oriTfinder
	L:1-8;R:12-19;D:28-29

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT

Reference
N/A

I. Information of Relaxase

ID	365
Name	Mob_p6043B
GenBank accession number	YP_001965376
Family	MOB_Q
Length	564 aa
UniProt ID	A0ES92
PDB ID	_
Pfam	MobA_MobL [PF03389.14], Evalue: 9.30E-66, Aligned region: 17..254
Note	putative relaxase
Protein sequence [Download]	MAIYHLSVSNVSRASGSKATATLSYISGRRVHDERRGETYDYGRKERVLRVGTLLPEGAP AEYADPAVLFNAVELHETGRTARPAKKIVVALPREFTPRQRVQALEEYIRENLNADGYAA TYAIHDDGRGNNPHAHILVANRQIDPATGGWARLKQRMEYVLDERGERVPLIDPETGRQK TDKRGRRQWKRTSVSLNPLDRKAKLKALRESWANTCNARLDETARIDHRSLEDQGSDLEP TIHEGYAARAIERAGGVSERCQTNREIRRSNSLLTAVRAELGRIFDRLGELFAAKIGRLR RRQARPEPAAPNWRYFEGDARRQLEADKADHTAAIRGKLMDARADVGNREEWWRSHGTEE HEAAKQIIDVARAASREARDANIFKRGRLLRNAEQVAGEQSERLRGAVPWLEDADIPADW DQANRFRMRTTKAIYDHDMQPRTRLVAELERRLEQAERAESERPSPEQVKALALRMAEQR AQAENPTQDTKRPAPSGDEPLDLSEPEDWGEASPFESRQAPRTKADLLNEIRQRTDRLTG QREAEQRQIDPWSAQPPQRRGHGR

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	756
Plasmid name	p6043B
GenBank accession number	NC_010861.1
Genome size	3680 bp
Coordinate of oriT [Strand]	192..223 [-]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Bifidobacterium longum DPC6043 [216816]

Reference
N/A