oriTDB
The information of the oriT region
oriTDB accession number 100294
Name oriT_p6043B  insolico
Sequence Completeness core
oriT length 32 nt
oriT sequence ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT
IR (inverted repeat)[1-8] [12-19] nt  (ATGCAACC..GGTTGCAT)
Location of nic site [28-29] nt
Conserved sequence flanking the
  nic site 		TAAGTGCG|CCCT
Note predicted by the oriTfinder
L:1-8;R:12-19;D:28-29
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 365
Name Mob_p6043B insolico
GenBank accession number YP_001965376
Family MOBQ
Length 564 aa
UniProt ID A0ES92
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 9.30E-66, Aligned region: 17..254
Note putative relaxase
Protein sequence [Download] MAIYHLSVSNVSRASGSKATATLSYISGRRVHDERRGETYDYGRKERVLRVGTLLPEGAP
AEYADPAVLFNAVELHETGRTARPAKKIVVALPREFTPRQRVQALEEYIRENLNADGYAA
TYAIHDDGRGNNPHAHILVANRQIDPATGGWARLKQRMEYVLDERGERVPLIDPETGRQK
TDKRGRRQWKRTSVSLNPLDRKAKLKALRESWANTCNARLDETARIDHRSLEDQGSDLEP
TIHEGYAARAIERAGGVSERCQTNREIRRSNSLLTAVRAELGRIFDRLGELFAAKIGRLR
RRQARPEPAAPNWRYFEGDARRQLEADKADHTAAIRGKLMDARADVGNREEWWRSHGTEE
HEAAKQIIDVARAASREARDANIFKRGRLLRNAEQVAGEQSERLRGAVPWLEDADIPADW
DQANRFRMRTTKAIYDHDMQPRTRLVAELERRLEQAERAESERPSPEQVKALALRMAEQR
AQAENPTQDTKRPAPSGDEPLDLSEPEDWGEASPFESRQAPRTKADLLNEIRQRTDRLTG
QREAEQRQIDPWSAQPPQRRGHGR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 756
Plasmid name p6043B
GenBank accession number NC_010861.1
Genome size 3680 bp
Coordinate of oriT  [Strand] 192..223 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Bifidobacterium longum DPC6043 [216816]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU