oriTDB
The information of the oriT region
oriTDB accession number 100293
Name oriT_p6043A  insolico
Sequence Completeness core
oriT length 35 nt
oriT sequence TGAATGTTACCACCGGTAACATGTAAGTGCGCCCT
IR (inverted repeat)[4-11] [15-22] nt  (ATGTTACC..GGTAACAT)
Location of nic site [31-32] nt
Conserved sequence flanking the
  nic site 		TAAGTGCG|CCCT
Note predicted by the oriTfinder
L:4-11;R:15-22;D:31-32
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 364
Name MobA_p6043A insolico
GenBank accession number YP_001965312
Family MOBQ
Length 370 aa
UniProt ID A0ES90
PDB ID _
Pfam MobA_MobL [PF03389.14], Evalue: 2.50E-56, Aligned region: 1..224
Note putative relaxase
Protein sequence [Download] MRDERTGEAFNGFGRRERVEHVCTMLPEGAPGEYLDPERLFNAVEMAEKRSDARPAKKIM
VALPREFDARERFRALEDFISWNITANGYACTYAIHTDKDGRNPHAHILVANRRIDPKTG
RWAAKSRSEFALDANGRRIPVIDPDTGRQKIGARNRKVWKRVNVSNNPLDSKEFLERLRR
EWADSCNALLPGYAVIDHRSFKARGIERIPTIHEGYASREMEKRGGRGDLCEENRRIQAL
NRLLDALRAMIGRLSDQAQGILTAVKRRQRPSGAPQAPSSPEPAERPQERPQARETPPQA
PQEPPKPIRTKKALTDRFKTRLDERLAENERKQAEKQAEPDMEETWDLSDPADPLNIGMG
WGTGGHGLGL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 755
Plasmid name p6043A
GenBank accession number NC_010857.1
Genome size 4896 bp
Coordinate of oriT  [Strand] 1805..1839 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Bifidobacterium longum DPC6043 [216816]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU