oriTDB
The information of the oriT region
oriTDB accession number 100291
Name oriT_pBS512_7  insolico
Sequence Completeness core
oriT length 58 nt
oriT sequence GTGTCGGGGCGCAGCCATGACCCAGTCACGTCGCGATAGCGGAGTGTATACAGGCTTA
IR (inverted repeat)[1-10] [14-23] nt  (GTGTCGGGGC..GCCATGACCC)
Location of nic site [54-55] nt
Conserved sequence flanking the
  nic site 		CAGG|CTTA
Note predicted by the oriTfinder
L:1-10;R:14-23;D:54-55
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 362
Name MobC_pBS512_7 insolico
GenBank accession number WP_012421781
Family Other
Length 107 aa
UniProt ID B2TSK0
PDB ID _
Pfam MobC [PF05713.10], Evalue: 7.60E-13, Aligned region: 50..94
Note putative relaxase
Protein sequence [Download] MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGRLPTLAPPLLRQLAAIGNNL
NQAARKVNSGQWSSGNRVQVVAALMAIGDELRRLRLAVREQGTRDDS
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 753
Plasmid name pBS512_7
GenBank accession number NC_010672.1
Incompatibility group ColRNAI
Genome size 7437 bp
Coordinate of oriT  [Strand] 7103..7160 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Shigella boydii CDC 3083-94 [344609]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU