oriTDB
The information of the oriT region
oriTDB accession number 100282
Name oriT_pETEC_5  insolico
Sequence Completeness core
oriT length 58 nt
oriT sequence GTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGAAGTGTATACTGGCTTA
IR (inverted repeat)[1-10] [14-23] nt  (GTGTCGGGGC..GCCATGACCC)
Location of nic site [54-55] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:1-10;R:14-23;D:54-55
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 353
Name Nuclease_pETEC_5 insolico
GenBank accession number WP_000635799
Family MOBP
Length 517 aa
UniProt ID _
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 5.00E-20, Aligned region: 41..242
Note putative relaxase
Protein sequence [Download] MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSF
AEKELPPGGREKVMASFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQSGKRL
QPYYDRADRPRIDAWQTLVNHHYGLHDPNAPENRRTLTLPDNLPETKQALAESVTRGIDA
LYHVGEIKGRQDVIQALTEAGLEVVRMTRSSISIADPNGGKNIRLKGAFYEQSFTDGRGV
REKAERESRIYRDNAERRVQQARKICKQGCDLKRDENQRRYSPVHNVDRGIAGKTPGRGE
RGDDAAQEGRVKAGREYGHDVTGDGPFPVYREWRDALVSWRADTGEPGRNQDTGRNIAET
EREDMGRGVCAGREKEISGHPAGEIGNGDSLSGEGLGTTDGVTQSDGAGKTFAERLRATA
TGLYAAAERMGERLRGIAENVFAYATGQRDAERAGHAVESAGAALERADRTLEPVIQREQ
EIRDERLIQEREHELSLERERQLEIQERTLDGPSLGW
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 744
Plasmid name pETEC_5
GenBank accession number NC_009791.1
Incompatibility group ColRNAI
Genome size 5033 bp
Coordinate of oriT  [Strand] 165..222 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Escherichia coli O139:H28 str. E24377A [331111]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU