 oriTDB accession number | 100279 |
| Name | oriT_pLW1071  |
Sequence Completeness  | core |
| oriT length | 34 nt |
| oriT sequence | GTGCCCATTTATACCCCTTTCAGGGGTAAATGGG |
| IR (inverted repeat) | [4-18] [22-34] nt (CCCATTTATACCCCT..AGGGGTAAATGGG) |
| Location of nic site | [2-3]nt |
| Conserved sequence flanking the nic site | _ |
| Note | predicted by the oriTfinder |
Visualization of oriT structure Reference| ID | 350 |
| Name | Nickase_pLW1071 |
| GenBank accession number | WP_011888495 |
| Family | MOBQ |
| Length | 643 aa |
| UniProt ID | A4IU06 |
| PDB ID | _ |
| Pfam | MobA_MobL [PF03389.14], Evalue: 3.00E-71, Aligned region: 16..223 |
| Note | putative relaxase |
| Protein sequence [Download] | MAYFLFRTQIISKSNRSAVACAAYRSGEALYSERDGLTKKYGHRDVPPETYILAPKHAPD WVYNRERLWNEVEKVEKQHNAQLAREIIVALPTQLTNEEQTQLLLDFCKENFADEGMVAD IAIHRDKKHNPHAHIMLTMRPFNEDGTWGKKRKKVNGKSVHLTNWNDKETLLKWRKNFAD RINEKFKEKGIDDRVSHESYEKQGIDKVPQIRLSREAYQYEQRMKREAEKQGKPYEPVTY YGKLNQEIQCINQELKALKQKEKVVSISDYQEEKSLNETIESIRKNASLNDVEKASLLLV AKRAKTYVDFAVARRVYHDLAEGNWKKKIDSQQLKLRALKNVINKAYHVYQQEPKQVIQY GFHPGKFNEQLREKIAQLKEMEKSFENELTKYEAVLKKAELALEVQKRLTEEEFRVLYPH AGADFRIEEKYHAVQYFKDTGGVLPESEIPAYAAKKEQEIHRMPTFAEQTRNMYQSLFVL NRTIQKQSRERMEALKARDFEQAFEASRKIEQCMLRKEKMSKELEENKAVLQAILSEHYG RYVSITNTAALLQLHELVERGESSKDLEADLRRIHVSEQQKLERMPKPETEAQIMEYQYR QHVADGLLEAIEEAQRANDRKKYEKDPTKKRQRRRYRGQEFER |
Reference| ID | 741 |
| Plasmid name | pLW1071 |
| GenBank accession number | NC_009329.1 |
| Genome size | 57693 bp |
| Coordinate of oriT [Strand] | 28359..28392 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation |  involvement in alkane degradation |
| Host bacterium [NCBI Taxonomy ID] | Geobacillus thermodenitrificans NG80-2 [420246] |
Reference| [1] Feng L et al (2007) Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir. Proc Natl Acad Sci U S A. 104(13):5602-7. [PMID:17372208] |