oriTDB
The information of the oriT region
oriTDB accession number 100275
Name oriT_pAOVO02  insolico
Sequence Completeness intact
oriT length 581 nt
oriT sequence CCCTTGAGCGCGTGCGCCGTGTGCCGCGCGTAGGTCGCCACGGCTCGCCAGTAGGCGGCC ATCGGCCCCTTGCGGCGTGCCCATGCCTTCTCGGCTTCGTCGTTGGCCTGCGTGCGCAGC TCGCGCAGCACGCGGGCGAGGCGCTGCCGGTCGGCCACCGGCAGCGCCTGGAGTTCGCGG CCTGCTGGAAGCTCCAGCAGCGGATTGATGTAGCCCATGTCGTTCGTCTCTCGTTTCTTG CCGGCGGTAGCCGGCCGCCTCGCAGAGCAGGATGCCCGTTGAGTGCCGCAGGCGCGAATA AGGGACAGCGAAGATAGATAACCGGCTCGCCGGTTAGCTAACTTCGCCTATCCTGCCCGC CTTACGGCGTTGATAACACCAAGGAAAGTCTATACCGAAACCTTCGCATCTGTCTGCATT CAGCGCGAAAAGATGGCGGATATATCGAATGAAGGCGTACAATGCCTGGAAAGCGCGCTA GATGCAGCGGTGTCAGGCTGCTATCCACGCGCTTTACATAGACTTTCCACGGGTCGATAC ATGAAAATGACGGCTATTTACAAACCACGGAAGCGAGGCGA
IR (inverted repeat)[139-151] [157-169] nt  (AGGCGCTGCCGG..CCGGCAGCGCCT)
[240-245] [250-255] nt  (GCCGGC..GCCGGC)
[308-326] [329-347] nt  (GCGAAGATAGATAACCGGC..GCCGGTTAGCTAACTTCGC)
Location of nic site [355-356] nt
Conserved sequence flanking the
  nic site 		TATCCTG|C
Note predicted by the oriTfinder
L:139-151;R:157-169;L:240-245;R:250-255;L:308-326;R:329-347;D:355-356
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 346
Name TraI_pAOVO02 insolico
GenBank accession number WP_011798731
Family MOBP
Length 752 aa
UniProt ID A1WDT1
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 1.80E-61, Aligned region: 12..252
Note putative relaxase
Protein sequence [Download] MIVKHVPMRSLGKSDFAGLVNYVTDAQSKDHRLGQVQITNCDAMSVQDAITEVLATQHTN
TRAKGDKTYHLIVSFRAGEQPSADTLRAIEERICAGLGFAEHQRVSAVHNDTDNLHIHIA
INKIHPTRHTMHEPFGQHRTLAELCTALERDYGLERDNHEPRQRGAEGRAADMERHAGVE
SLVGWIKRECLDEIKGAQSWQELHQVMRDNGLELRERANGLVIEAGDGTMVKASTLARDL
SKPKLEARLGPFEPSPERQTRTKAKRQYQKDPIRLRVNTVELYARYKAEQQTLTATRGQA
LEQARRRKDRLVEAAKRSNRLRRATIKVVGESRTNKKLLYAQASKALRDEIQAINKQYQQ
DRQALYDSHSRRTWADWLKKEATHGNAEALAALRAREAAQGLQGNTIQGRGDARPGHAPV
TDNITKKGTIIFRAGLSAVRDDGDKLQVSREATREGLQEALRLAMERYGSRITVNGTTQF
KAQVIRAAVDSQLPITFADPALESRRLALLKKENTHERPDRTERADQRPAEHRGRAGRGP
GGPGQRAAAHDDAARPVAIARAGFGRPGAGRTDAAGVHAGAVHRKPDIGRIGRVPPPQSQ
HRLRTLSQLGVVRIAGGSEVLLPRDVPRHLEQQGTQPDHQLRRGISRPGTGVATAPPGLA
AADKYIAEREAKRSKGFDIPKHARYTDGDGALAFQGVRNIEGQALALLKRGDEVMVMPID
QATARRLSRIAVGDAVTITPKGSIKTSKGRSR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 737
Plasmid name pAOVO02
GenBank accession number NC_008766.1
Incompatibility group IncP(Beta)
Genome size 63609 bp
Coordinate of oriT  [Strand] 55155..55735 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Acidovorax sp. JS42 [232721]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU