oriTDB
The information of the oriT region
oriTDB accession number 100259
Name oriT_pSHaeC  insolico
Sequence Completeness intact
oriT length 238 nt
oriT sequence AGTGGCTAACAATTAGCCACTATTTTTTCGTCAGAAAAAATCCTAAGGGGCTTGGGGATT ATCCCCAACAAGCAGGCGTCGCTACCACGTGAGTGGCTAGCAAAGCCAATGCTTGCCAAA CCACTTTATTACTTGATGAAATTTAGATTATCATATAATCTAAATTTATATTAAGTAATA TCTTTCGAAGAAAGCGTGGTGGGATTTGATGAGCGAACAAAATAAATTTGTGGCTAGC
IR (inverted repeat)IR1: [52-59] [61-68] nt  (TTGGGGAT..ATCCCCAA)
IR2: [94-98] [104-108] nt  (TGGCT..AGCCA)
Location of nic site [115-116] nt
Conserved sequence flanking the
  nic site 		TGCTTG|CCA
Note predicted by the oriTfinder
L:52-59;R:61-68;L:94-98;R:104-108;D:115-116
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 330
Name Rlx_pSHaeC insolico
GenBank accession number WP_011276930
Family MOBP
Length 335 aa
UniProt ID Q4L2X5
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 3.10E-80, Aligned region: 8..242
Note putative relaxase
Protein sequence [Download] MATTKLSATKSTSRAINYAEKRAEEKSGLNCDIDYAKSSFKATRELYGKTGGNEGHVIIQ
SFKPGEVTPEQCNQLGLALAEKFATNHQVAVYTHCDTDHIHNHIVINAVNLETGKKFNNN
KQALRDLRDFNDNVCREHGLSVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAI
DQSKATNMDEFKEHLSQYGIEIARVTPKSITYRHLAEDKKVRGRRLGEDYNKGGIEDGFE
RQIQRQQQEREYDKDIQPKRPTSNRDEPAQRDTGVTQSDWDKFAQDTNELERRRQAAESA
RLVDEKARRDREERERAEQASRTIIDNDRDHGLEL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 721
Plasmid name pSHaeC
GenBank accession number NC_007171.1
Genome size 8180 bp
Coordinate of oriT  [Strand] 5700..5937 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Staphylococcus haemolyticus JCSC1435 [279808]
Reference
[1] Takeuchi F et al (2005) Whole-genome sequencing of staphylococcus haemolyticus uncovers the extreme plasticity of its genome and the evolution of human-colonizing staphylococcal species. J Bacteriol. 187(21):7292-308. [PMID:16237012]

Microbial Bioinformatics Group in MML, SJTU