oriTDB

oriT
Relaxosome
T4CP
Plasmid&Host

The information of the oriT region

oriTDB accession number	100254
Name	oriT_pTB6
Sequence Completeness	core
oriT length	32 nt
oriT sequence	ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT
IR (inverted repeat)	[1-8] [12-19] nt (ATGCAACC..GGTTGCAT)
Location of nic site	[28-29] nt
Conserved sequence flanking the nic site	TAAGTGCG\|CCCT
Note	predicted by the oriTfinder
	L:1-8;R:12-19;D:28-29

Visualization of oriT structure

Reference
N/A

I. Information of Relaxase

ID	325
Name	Mob_pTB6
GenBank accession number	YP_209204
Family	MOB_Q
Length	362 aa
UniProt ID	Q5FBB0
PDB ID	_
Pfam	MobA_MobL [PF03389.14], Evalue: 4.00E-66, Aligned region: 17..254
Note	putative relaxase
Protein sequence [Download]	MAIYHLSVSNVSRASGSRATATLSYITGKRVHDERRGETYDYGRKERVLRVGTLLPEGAP AEFADPAVLFNAVELHETGRTARPAKKIVVALPREFTPRQRVQALEEYIRENLNADGYAA TYAIHEDREGNNPHAHILVANRQIDPATGGWARLKQRMEYVLDERGERVPLIDPETGRQK TDKRGRRQWKRTSVSLNPLDRKAKLKALRESWAKTCNARLDETARIDHRSLEDQGSDLEP TIHEGYAARAIERAGGVSERCEANREIRRSNGLLTSIRTELGRIFDRLGELFAAKIRAAA PTPGEAGTGQGAELALLRGRRAPPARSRQGRPHGSDPWKTHGSQGRREEPRGVVEEPRHR GV

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
N/A

N/A

Information of plasmid

ID	716
Plasmid name	pTB6
GenBank accession number	NC_006843.1
Genome size	3624 bp
Coordinate of oriT [Strand]	3476..3507 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Bifidobacterium longum [216816]

Reference

[1] Tanaka K et al (2005) Structural and functional analysis of pTB6 from Bifidobacterium longum. Biosci Biotechnol Biochem. 69(2):422-5. [PMID:15725673]