 oriTDB accession number | 100251 |
| Name | oriT_pSERP  |
Sequence Completeness  | intact |
| oriT length | 238 nt |
| oriT sequence | AGTGGCTAGCATTTTGCCACTCATTTTTTGCTTTAGCAAAAACATAAGGGGCTTGGGGAT TATCCCCAACAAGCCGGCGTCGCTACCACGTTAGTGGCTAGCAAAGCCAGTGCTTGCCAA ACCACTTTATTACTTGATGAAATTTAGATTATCATATAATCTAAATTTATATTAAGTAAT ATCTTTCGTAGAAAGCGTGGTGGGATGTATGAGCGAACAAAAACATTTTGTGGCTAGC |
| IR (inverted repeat) | IR1: [53-60] [62-69] nt (TTGGGGAT..ATCCCCAA) IR2: [95-99] [105-109] nt (TGGCT..AGCCA) |
| Location of nic site | [116-117] nt |
| Conserved sequence flanking the nic site | TGCTTG|CCA |
| Note | predicted by the oriTfinder |
Visualization of oriT structure Reference| ID | 322 |
| Name | Mob_pSERP |
| GenBank accession number | WP_012817962 |
| Family | MOBP |
| Length | 335 aa |
| UniProt ID | _ |
| PDB ID | _ |
| Pfam | Relaxase [PF03432.13], Evalue: 1.30E-80, Aligned region: 8..242 |
| Note | putative relaxase |
| Protein sequence [Download] | MATTKLSATKSTSRAINYAEKRAEEKSGLNCDIDYAKSSFKVTRELYGKTGGNEGHVIIQ SFKPGEVTPEQCNQLGLALAEKFAPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNN KQALRDLRDFNDNVCREHGLSVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAI DQSKATNMDEFKDHLSQYGIEIARVTPKSITYRHLAEDKKVRGRRLGEDYNKGGIEDGFE RQIQRQQQEREDDNDIQPKRPTSNRDEPTQRDTGVTQSDWDKFAQDTNELERRRQAAESA RLADEKARRDREERERAEQASRTIIDNDRDYGLEL |
Reference| ID | 713 |
| Plasmid name | pSERP |
| GenBank accession number | NC_006663.1 |
| Genome size | 27310 bp |
| Coordinate of oriT [Strand] | 22132..22369 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Staphylococcus epidermidis RP62A [176279] |
Reference| [1] Gill SR et al (2005) Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain. J Bacteriol. 187(7):2426-38. [PMID:15774886] |