 oriTDB accession number | 100246 |
| Name | oriT_pEL60  |
Sequence Completeness  | core |
| oriT length | 106 nt |
| oriT sequence | AGTACGGGACAAGATGTGTTTTTGGAGTACCGCCGACACGCGGCGGCCGTCCAAAAACGT CTTGGTCAGGGCAAGCCCCGACACCCCCTAACGAGGTTAGCTATCT |
| IR (inverted repeat) | [18-35] [41-58] nt (GTTTTTGGAGTACCGCCG..CGGCGGCCGTCCAAAAAC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site | _ |
| Note | predicted by the oriTfinder |
Visualization of oriT structure Reference| ID | 317 |
| Name | MobA_pEL60 |
| GenBank accession number | NP_943241 |
| Family | MOBP |
| Length | 659 aa |
| UniProt ID | Q6TFV4 |
| PDB ID | _ |
| Pfam | Relaxase [PF03432.13], Evalue: 1.30E-31, Aligned region: 13..334 |
| Note | putative relaxase |
| Protein sequence [Download] | MVIPKIIEGRRDKKSSFGQLIKYMADKPSQELTDTVQPTPETALAVKSDMFEGLNNYLTR KQKVISTPVNVEPGVQRVVVGDVTCQYNTFSLDGAALEMNSVSQQNTRCKDPVMHYVLSW PDYEKPNDDQVFDSVKFTLASMGMSDHQYVAAIHRDTDNLHVHVAVNRINPQTYKAASSS FTKDTLHQACRLLELKNGWSHSNGAYVVNDRQQIVRNPHSKKERGNWRSLDRINKMENKE GVETLYRYIVGDEQVGGSRQNLIHVSAGLREAKSWDDVHKTFADIGLRVEKAQGKKGYVI THEHQNQKTAVKASLVFNKAQYTLKSMEERFGEYQPSHIEPAKVSVFKTAYTPGAYRRDA NKRLQRKIERAEERMLLKGRYRAYRNNLPIYSPDKDRIADEYRKIAQHTRLVKNNVRHSV SDPHTRKLMYNLAEFKRLQAVANLRLSLREERNGFRAANPRLSYREWVEQEALKGDKAAL SQMRGFAYSSRKKEKYKQQLVEQIGFNRTFNAITSHDRDDVAVMASARHGVKPRLLKDGT VIFERDGKPVAADRGHIVLTESNGIDKEKTADLAIALTIAGKAKSVRVDGDGEFKELCCN RIVDAAVNHNHPVAQGITFTDAAQQAYAQNEKHRLIREQNNSKNEMQFRSESDDKFNPK |
Reference| ID | 708 |
| Plasmid name | pEL60 |
| GenBank accession number | NC_005246.1 |
| Incompatibility group | IncL/M(pOXA-48) |
| Genome size | 60145 bp |
| Coordinate of oriT [Strand] | 28663..28768 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Erwinia amylovora LebB66 [552] |
Reference| [1] Foster GC et al (2004) Nucleotide sequences, genetic organization, and distribution of pEU30 and pEL60 from Erwinia amylovora. Appl Environ Microbiol. 70(12):7539-44. [PMID:15574957] |