oriTDB
The information of the oriT region
oriTDB accession number 100244
Name oriT_pSCFS1  insolico
Sequence Completeness core
oriT length 38 nt
oriT sequence CTTTATGGAATAAAGTATAGTGTGTTATACTTTACATG
IR (inverted repeat)[1-6] [10-15] nt  (CTTTAT..ATAAAG)
Location of nic site [24-25] nt
Conserved sequence flanking the
  nic site 		GTG|TTA
Note predicted by the oriTfinder
L:1-6;R:10-15;D:24-25
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 315
Name ORF5_pSCFS1 insolico
GenBank accession number NP_899168
Family MOBV
Length 392 aa
UniProt ID Q7WVB7
PDB ID _
Pfam Mob_Pre [PF01076.18], Evalue: 2.40E-69, Aligned region: 39..230
Note putative relaxase
Protein sequence [Download] MQGFVAEPIASQSTHFMDIKYSLLYFTWKLTELWGCIFVSFAVVRMQKMKSPDLKGMQFH
NQRERESRTNPDIDPDRAHFNYDLLHQEKIDYNKQVKAIIESQKVSERKTRKDAVLVNEL
LVTSDRKFFDGLDPAEQKRFFEESYKLFSERYGKQNIAYATVHNDEKTPHMHLGVVPMRD
GKLQGKNIFNRQELQWMQEEFPKHMQSVGFEVERGIASDRKHIEMSRFKALTLNEEIKTL
EKETEVLRNALTASKKVDELQVSKPSLFDRNHVKLPVEDFEALKARAKATEAIESTIEAH
EKRFDDMVDNVIASDRKLDQEKTKTAQLQKENSGLKKENLELQKENKTLKSQLNVLMEFA
KSQLEKFKEWQKERQQEKEKNIARKRDQELER
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 706
Plasmid name pSCFS1
GenBank accession number NC_005076.1
Genome size 17108 bp
Coordinate of oriT  [Strand] 15358..15395 [-]
Drug resistance experimental resistance to florfenicol,chloramphenicol, MLSB(macrolidelincosamide-streptogramin B), spectinomycin
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Staphylococcus sciuri [1296]
Reference
[1] Kehrenberg C et al (2004) Nucleotide sequence and organization of the multiresistance plasmid pSCFS1 from Staphylococcus sciuri. J Antimicrob Chemother. 54(5):936-9. [PMID:15471995]

Microbial Bioinformatics Group in MML, SJTU