oriTDB
The information of the oriT region
oriTDB accession number 100231
Name oriT_pC  insolico
Sequence Completeness intact
oriT length 85 nt
oriT sequence AGCGGGTGTCGGGGCGCAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGC TTAACCATGCGGCATCAGTGCAGAT
IR (inverted repeat)_
Location of nic site [59-60] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
D:59-60
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 302
Name MbeA_pC insolico
GenBank accession number NP_604403
Family MOBP
Length 533 aa
UniProt ID Q8RLL1
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 2.00E-20, Aligned region: 62..262
Note putative relaxase
Protein sequence [Download] MSCAGCVWPSGNRGRGMIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELI
DATPFAKKYTSGVLSFAEKELPPGGREKVMASFERVLMPGLEKNQYSILWVEHQDKGRLE
LNFVIPNMELQTGKRLQPYYDRADRPRIDAWQTLVNHHYGLHDPNAPENRRTLTLPDNLP
ETKQALAESVTRGIDALYHAGEIKGRQDVIQALTEAGLEVVRVTRSSISIADPNGGKNIR
LKGAFYEQSFTDGRGVREKAERESRIYRENAERRVQEARRVCQRGCDLKRDENQRRYSPV
HSLDREIAGKTPGRGERGDDAAQEGRVKAGREYGHDVTGDSLSPVYREWRDALVSWRTDT
DEPGRNQEAGRDIAETEREDMGRGVCAGREQEIPCPSVREISGGDSLSGERVGTSEGVTQ
SDRAGNTFAERLRAAATGLYAAAERMGELLRGIAEDVFAYATGQRDAERAGHAVESAGAA
LERADRTLEPVIQRELEIREERLIQEREHALSLERERQPEIQERTLDGPSLGW
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 693
Plasmid name pC
GenBank accession number NC_003457.1
Incompatibility group ColRNAI
Genome size 5269 bp
Coordinate of oriT  [Strand] 749..833 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica subsp. enterica serovar Enteritidis [149539]
Reference
[1] Gregorova D et al (2002) Plasmid pC present in Salmonella enterica serovar Enteritidis PT14b strains encodes a restriction modification system. FEMS Microbiol Lett. 214(2):195-8. [PMID:12351230]

Microbial Bioinformatics Group in MML, SJTU