oriTDB
The information of the oriT region
oriTDB accession number 100230
Name oriT_pK  insolico
Sequence Completeness intact
oriT length 174 nt
oriT sequence GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAC TATGTTGGCACGGGTGCGGGAATCAGTGAAGCGCTTCATGTGGCAGGAGAAAAATGCAGC AGCGGAGCGTAAGCAGAATATATGAGACAGGATATATTCCGCTTCCTCGCTCAC
IR (inverted repeat)[2-11] [15-24] nt  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site [55-56] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
L:2-11;R:15-24;D:55-56
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 301
Name MbeA_pK insolico
GenBank accession number NP_604399
Family MOBP
Length 515 aa
UniProt ID Q8RLL4
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 2.50E-17, Aligned region: 58..264
Note putative relaxase
Protein sequence [Download] MPDSSGCGMPCWKRVQTMIVKFHPRGRGGGAGPVDYLLGKDRQRDGATVLQGKPEEVREL
IDASPYAKKYTSGVLSFAEKDLPPGQREKLMASFERVLMPGLDKDQYSVLWVEHQDKGRL
ELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSAL
PETKQEAAQAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKSSISIADPDGGRNI
RLKGAIYEQSFNAGKGLRAEIESAAAEYRRDAESRIQRAREVCQSGTERKREENQRRHPR
PRPEAVLSHEPAHERHGAYGQPDVADHRPGVCTADSIGRKHSVVAGAADTRQLHDYPGAE
AHAGHAVREEQRRAALDLRRAETPLREGEPGSGTVRRGFELDDTGGEIAHDGAGKTVAER
IRAATAGLLEKAGRVGERLRGMADDVWSYATGERGAERARHGLEQAGAEFERSAAPVVER
LNSIEAHRQQERAAQHQKTLELERSQRQKGFELGM
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 692
Plasmid name pK
GenBank accession number NC_003456.1
Genome size 4245 bp
Coordinate of oriT  [Strand] 601..774 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica subsp. enterica serovar Enteritidis [149539]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU