oriTDB
The information of the oriT region
oriTDB accession number 100228
Name oriT_pSFD10  insolico
Sequence Completeness intact
oriT length 86 nt
oriT sequence AGCGGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGC TTAACCATGCGGCATCAGTGCAGATT
IR (inverted repeat)_
Location of nic site [59-60] nt
Conserved sequence flanking the
  nic site 		CTGG|CTTA
Note predicted by the oriTfinder
D:59-60
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 299
Name MobA_pSFD10 insolico
GenBank accession number NP_203138
Family MOBP
Length 517 aa
UniProt ID Q93LC3
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 9.70E-19, Aligned region: 49..246
Note putative relaxase
Protein sequence [Download] MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSF
AEKELPPGGREKVMASFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQTGKRL
QPYYDRADRPRIDAWQTLVNHHYGLHDPNAPENRRTLTLPDNLPETKQALAESVTRGLEV
LYHAGEIKGRQDVIQALTEVGLEVVRVTRSSISIADPNGGRNIRLKGAFYEQYFTDGRGV
REKAERESRIYRENAERRIQQARRICKRGCDLKRDENQRRYSPVHNVDRGIAEKTPGRGE
RGDDAAPEGRVKAGREYGRDVTGDSLSPVYREWRDALVSWREDTDEPGRNQGTGRDIAET
EREDMGRGVCSGREKEISGPSVREISRGDALSGEGLDTTDGVIRNDRAGNTFAERLRAAA
TGLYAAAERMGERLRGIAEDVFAYATGQRDAERAGHAVESAGTALERADRTLEPVIQREL
EIREERLIQEREHALSLERERQLEIQERTLDGPSLSL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 690
Plasmid name pSFD10
GenBank accession number NC_003079.1
Incompatibility group ColRNAI
Genome size 4091 bp
Coordinate of oriT  [Strand] 991..1076 [-]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Salmonella enterica 79500 [28901]
Reference
[1] Liu M et al (2002) Sequence analysis and characterization of plasmid pSFD10 from Salmonella choleraesuis. Plasmid. 48(1):59-63. [PMID:12206756]

Microbial Bioinformatics Group in MML, SJTU