oriTDB
The information of the oriT region
oriTDB accession number 100226
Name oriT_pER13  insolico
Sequence Completeness core
oriT length 42 nt
oriT sequence GCACATTTACGAAGTAAAGTATAGTGCGTTATACTTTACATG
IR (inverted repeat)[3-10] [14-20] nt  (ACATTTAC..GTAAAGT)
Location of nic site [28-29] nt
Conserved sequence flanking the
  nic site 		GCG|TTA
Note predicted by the oriTfinder
L:3-10;R:14-20;D:28-29
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 297
Name Mob_pER13 insolico
GenBank accession number NP_115336
Family MOBV
Length 499 aa
UniProt ID Q93SL7
PDB ID _
Pfam Mob_Pre [PF01076.18], Evalue: 3.30E-73, Aligned region: 1..194
Note putative relaxase
Protein sequence [Download] MSYMVARMQKMKAGNLGGAYKHNERVFETHSNKDIDPSRSPLNYELTDRDHSVSYEKQIK
DYVNENKISNRAIRKDAVLCDEWIITSDKSFFEKLSEGETREFFETAKNYFAENYGEDNI
AYASVHLDESTPHMHMGVVPFQDGKLSSKAMFDKEELKKIQEDLPKYMNEHGFELERGEL
NSEAKHKTVAEFKQEMAGKEIEKQLVLEYGAPEYVNHQEEFVTKEEYQEAYEVFQNELGA
WVDKSDFSWRETTFQEKIDWVKNHQQEELQQLVSSRKPLEDEIRTLNEVLKEKYEELDKI
ELRASESLSELSGVEGYINNLEKHSNALESKIGGLENEYLRLAKQNARLSDLKIMSEKEL
AEIQPKKGMFGKEHVELTKEQFEKFKGLIYRSKNLVHEKVLENDQLRRRMPLRSSKNGFE
ASLQWVKDKTKGESIDRLKSEIRALKNENSVLRQQNDKMLGKLREFMPDKALNTFISELK
AIQPIVKIVKRVIEKGLGL
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 688
Plasmid name pER13
GenBank accession number NC_002776.1
Genome size 4139 bp
Coordinate of oriT  [Strand] 1836..1877 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Streptococcus thermophilus [1308]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU