oriTDB
The information of the oriT region
oriTDB accession number 100223
Name oriT_pMD136  insolico
Sequence Completeness incomplete
oriT length 63 nt
oriT sequence GTAAATTGATTGATTAAGCTCGTGAAACCCTTAGGGTTTCACGAGCTTAATCAATCAATT TAC
IR (inverted repeat)[1-31] [33-63] nt  (GTAAATTGATTGATTAAGCTCGTGAAACCCT..AGGGTTTCACGAGCTTAATCAATCAATTTAC)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note predicted by the oriTfinder
L:1-31;R:33-63
Visualization of oriT structure
Reference
 N/A
I. Information of Relaxase
ID 294
Name Orf2_pMD136 insolico
GenBank accession number NP_052581
Family MOBP
Length 386 aa
UniProt ID Q9WW30
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 4.50E-64, Aligned region: 8..248
Note putative relaxase
Protein sequence [Download] MATTHIKRSDSASRLVNYAEKRAVLKDGLNLDVDYAKSQLKQVREVYGNQGKTQAYASRI
SFSPKELDPTNENDQQKALEIAKEVYQKTYPNQQVALYEHADTNALHVHAVIGAIDLETG
RKMHGNWQEYREKLVHNTDEISQEHGLEVTQVDPNRYEKRTMAEIKMQAKGQPTWKDQIR
QAVDKTMANRLVTDFQTFRDDLKQKTVDVWERGKDLTYQLTGTNYKARGNKLGTAYEKGE
IYHELERRTRNHTKTRNPDTAKPDRTQPNLERNQELSGHANSITEQTTDRIDRTAPTDRA
SQSTGQSGFSNDLEQFRKQQRDQQTTINRDAQRRARTVQRANTQDKSKDNRSLKTDKQRP
KEQQRDVEKSQQQSKSNRSRNDGPSR
Reference
 N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome
 N/A
 N/A
Information of plasmid
ID 685
Plasmid name pMD136
GenBank accession number NC_002126.1
Genome size 19533 bp
Coordinate of oriT  [Strand] 19376..19438 [+]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Pediococcus pentosaceus ATCC 43200 [1255]
Reference
[1] Kantor A et al (1997) Molecular characterization of the replicon of the Pediococcus pentosaceus 43200 pediocin A plasmid pMD136. FEMS Microbiol Lett. 151(2):237-44. [PMID:9228759]

Microbial Bioinformatics Group in MML, SJTU