 oriTDB accession number | 100214 |
| Name | oriT_pLS55  |
Sequence Completeness  | incomplete |
| oriT length | 35 nt |
| oriT sequence | CCAGAAGAATTCTGGTATACCGTGTTATACCAAAT |
| IR (inverted repeat) | [6-9] [10-13] nt (AGAA..TTCT) |
| Location of nic site | [24-25] nt |
| Conserved sequence flanking the nic site | TACCGTG|TTAT |
| Note | _ |
Visualization of oriT structure Reference| [1] Alippi AM et al (2014) Tetracycline-resistance encoding plasmids from Paenibacillus larvae, the causal agent of American foulbrood disease, isolated from commercial honeys. Int Microbiol. 17(1):49-61. [PMID:25296446] |
| ID | 207 |
| Name | Mob_pLS55 |
| GenBank accession number | YP_001691307 |
| Family | MOBV |
| Length | 439 aa |
| UniProt ID | B0YMX1 |
| PDB ID | _ |
| Pfam | Mob_Pre [PF01076.18], Evalue: 5.30E-37, Aligned region: 1..187 |
| Note | relaxase |
| Protein sequence [Download] | MEVYEMAHVQKFTKGNMQGLSIHLDRKTENHSNKNIDTERTHLNYDLCEKDGDTLSRMDE RLSEVYCMNRKDVKVCCEWIVTLPESLHNESVEYQRKFFEETYEFLTDRYGGQENVVSAN VHNDETTPHMHFDFVPVVWDEKKEREKVSAKEVLTRSELKSFHTDLDRHLKERIPEIYQE GILNDKTIGIENIHSLKKYSAEIEQQKEEMANEFKSFKYPQKVLKSIEREVEKKTVGVFN KKEVVMLPAERYEKMKELSNSSIRIQQRFDKYKSKAVEEIKNLKVNVKNFEEDNEHLRYR NIDFGREITLLQKERDRQTENAIVYKSILEEKEPDLQISTLEFQGRLVLHNLENDRMPKN KEEGENWLEILEENKEEKTIPQNRLEKAIGKIKLFLEKFIKRAKEADFSMDWLVEKNKEL SQQRQQQKKTKSRSSGMEL |
Reference| # | ID | Name | GenBank | Length | Note |
| 1 | 291 | _ |
| ID | 207 |
| Plasmid name | pLS55 |
| GenBank accession number | NC_010375.1 |
| Genome size | 5031 bp |
| Coordinate of oriT [Strand] | 2038..2072 [+] |
| Drug resistance | resistance to tetracycline (tetL) |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Lactobacillus sakei Rits9 [1599] |
Reference