 oriTDB accession number | 100206 |
| Name | oriT_CloDF13  |
Sequence Completeness  | incomplete |
| oriT length | 13 nt |
| oriT sequence | GTGGGTGGTCGGG |
| IR (inverted repeat) | _ |
| Location of nic site | [7-8] nt |
| Conserved sequence flanking the nic site | _ |
| Note | CloDF13 familiy |
Visualization of oriT structure (The oriT was characterized experimentally) Reference| [1] Francia MV et al (2004) A classification scheme for mobilization regions of bacterial plasmids. FEMS Microbiol Rev. 28(1):79-100. [PMID:14975531] |
| [2] Núñez B et al (2001) Two atypical mobilization proteins are involved inplasmid CloDF13 relaxation. Mol Microbiol. 39(4):1088-99. [PMID:11251827] |
| ID | 199 |
| Name | MobC_CloDF13 |
| GenBank accession number | NP_052376 |
| Family | MOBC |
| Length | 148 aa |
| UniProt ID | P08097 |
| PDB ID | _ |
| Pfam | |
| Note | relaxase |
| Protein sequence [Download] | MILRGCTMALERYNVSQPKRQAERGENTADPALAAGRACSTAELVARRLGIAAVQPVYRF LDTWWRKGCWSGEITRLTAVRSACGADAARGGVLVRRGRAADGHYSVSCRRGVCAQLPRT GWPFELLRLAMEGNSRGAPAGGTCTVLP |
Reference| [1] Francia MV et al (2004) A classification scheme for mobilization regions of bacterial plasmids. FEMS Microbiol Rev. 28(1):79-100. [PMID:14975531] |
| [2] Núñez B et al (2001) Two atypical mobilization proteins are involved inplasmid CloDF13 relaxation. Mol Microbiol. 39(4):1088-99. [PMID:11251827] |
| # | ID | Name | GenBank | Length | Note |
| 1 | 280 | _  |
| ID | 199 |
| Name | MobB_CloDF13 |
| SecReT4 accesion number | _ |
| GenBank accession number | NP_052377 |
| Family | TrwB/TraD |
| Length | 529 |
| UniProt ID | P08098 |
| PDB ID | _ |
| Pfam | |
| Note | Type IV Secretion System Coupling Protein |
| Protein sequence [Download] | MGLSHKERREYGRSYKRDNNRTAPFSCWPRWIRPGGWSGHGGMSGTTRTGVTARLAFWGG WLSPCLSRAGEKPSCVRTSTRTQIITCCSRLTCSGLPGARAGWLSGLCWRGSGVLLLDGH FAAADEAVNRKLNRRAGAQPATGEMTDVRQPAFRGAGTVNALARFFHGRGPETAGVFLGK DEQGEPVLVPRDTWRKTNIQILGLPGSGKSVMATNALIRSVRDFGDAVVYFDQRGPVAAL LPAHCPNFTLLDLRPGKPAQLNLFRDLDQYALKNLLVAGFNLSETGHVADHYRISEQKAA KLIAEQVSAGGKHSAGAGGGVRAAGGPEKGREGADHQAGERGRPERPADGQRHRRGGDNQ RRRLLYVIGSMDDEAVIRVQKMLFARCAQIIIARDEFRRWPHASIMLDEIKYLLSKYVLN ALGTVRSRDCNLRLAHHAGRLRAAGQDLPADFVKTTVLDNTPIRWFYRAASQESRSGAGQ TGEIRVDVERRGPAGRRGTWSISAGTASSRRSRPLFDVNTLQHLLTGSR |
Reference| [1] Cabezón E et al (1994) Two atypical mobilization proteins are involved inplasmid CloDF13 relaxation. J Bacteriol. 176(14):4455-8. [PMID:8021231] |
| [2] Buscher BA et al (2005) Two atypical mobilization proteins are involved inplasmid CloDF13 relaxation. J Bacteriol. 187(9):2927-38. [PMID:15838018] |
| [3] Francia MV et al (2004) Two atypical mobilization proteins are involved inplasmid CloDF13 relaxation. FEMS Microbiol Rev. 28(1):79-100. [PMID:14975531] |
| [4] Núñez B et al (2001) Two atypical mobilization proteins are involved inplasmid CloDF13 relaxation. Mol Microbiol. 39(4):1088-99. [PMID:11251827] |
| ID | 199 |
| Plasmid name | CloDF13 |
| GenBank accession number | NC_002119.1 |
| Genome size | 9957 bp |
| Coordinate of oriT [Strand] | 9750..9762 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Enterobacter cloacae [550] |
Reference