 oriTDB accession number | 100201 |
| Name | oriT_pDR1-1  |
Sequence Completeness  | intact |
| oriT length | 335 nt |
| oriT sequence | GATCTTTTGCCCATTTTATTTTTATAAAATGGGCAGGTGGCGTTTGCGTAAAGCAAATCG ACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGT AATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTAT ATGGTCTATTTTGTTGTGAGGATTGTAACCGAATAGGGCGCAATGCTTATTACAAAATCA ATGACAAAGGGCGATTGAGGAATGAGCGCTGGGGCATTTTATCTTTGAGGAAGTTCTTGA TGGATCAGAAAAATGTATCACAAATTTAAACAAAG |
| IR (inverted repeat) | IR1: [10-19] [24-33] nt (CCCATTTTAT..ATAAAATGGG) IR2: [79-91] [95-107] nt (AAAAGGGGAAAGT..ACTTCCCCCTTTT) IR3: [113-127] [140-154] nt (CACATTGTAATACAA..TTGTATTACAATGTG) |
| Location of nic site | [162-163] nt |
| Conserved sequence flanking the nic site | CTTG|CA |
| Note | _ |
Visualization of oriT structure Reference| [1] Strahinic I et al (2009) Molecular characterization of plasmids pS7a and pS7b from Lactococcus lactis subsp. lactis bv. diacetylactis S50 as a base for the construction of mobilizable cloning vectors. J Appl Microbiol. 106(1):78-88. [PMID:19040703] |
| ID | 194 |
| Plasmid name | pDR1-1 |
| GenBank accession number | NC_004164.2 |
| Genome size | 7412 bp |
| Coordinate of oriT [Strand] | 2..336 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Lactococcus lactis lactis bv. diacetylactis DRC1 [44688] |
Reference