 oriTDB accession number | 100199 |
| Name | oriT_pKJ36  |
Sequence Completeness  | core |
| oriT length | 32 nt |
| oriT sequence | ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT |
| IR (inverted repeat) | [1-8] [12-19] nt (ATGCAACC..GGTTGCAT) |
| Location of nic site | [28-29] nt |
| Conserved sequence flanking the nic site | TAAGTGCG|CCCT |
| Note | _ |
Visualization of oriT structure Reference| [1] Francia MV et al (2004) A classification scheme for mobilization regions of bacterial plasmids. FEMS Microbiol Rev. 28(1):79-100. [PMID:14975531] |
| [2] Becker EC et al (2003) Relaxed specificity of the R1162 nickase: a model for evolution of a system for conjugative mobilization of plasmids. J Bacteriol. 185(12):3538-46. [PMID:12775691] |
| ID | 192 |
| Name | MobB_pKJ36 |
| GenBank accession number | NP_072178 |
| Family | MOBQ |
| Length | 346 aa |
| UniProt ID | Q9F152 |
| PDB ID | _ |
| Pfam | MobA_MobL [PF03389.14], Evalue: 3.50E-66, Aligned region: 17..254 |
| Note | MobA/MobL family; 39.0 kDa; pI=10.66; similar to plasmid pKJ50 MobA protein |
| Protein sequence [Download] | MAIYHLSVSNVSRASGSRATATLSYITGKRVHDERRGETYDYGRKERVLRVGTLLPEGAP AEFADPAVLFNAVELHETGRTARPAKKIVVALPREFTPRQRVQALEEYIRENLNADGYAA TYAIHEDREGNNPHAHILVANRQIDPATGGWARLKQRMEYVLDERGERVPLIDPETGRQK TDKRGRRQWKRTSVSLNPLDRKAKLKALRESWAKTCNARLDETARIDHRSLEDQGSDLEP TIHEGYAARAIERAGGVSERCEANREIRRSNGLLTAIRTELGRIFDRLGELFAAKIRQLR QRQAERNRPRSRTGATSRATRAASSKPTGPTTRQRSVENSWEPRPT |
Reference| [1] Francia MV et al (2004) A classification scheme for mobilization regions of bacterial plasmids. FEMS Microbiol Rev. 28(1):79-100. [PMID:14975531] |
| # | ID | Name | GenBank | Length | Note |
| 1 | 272 | _ | _ | _ | _ |
| ID | 192 |
| Plasmid name | pKJ36 |
| GenBank accession number | NC_002635.1 |
| Genome size | 3625 bp |
| Coordinate of oriT [Strand] | 3482..3513 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Bifidobacterium longum KJ [216816] |
Reference