oriTDB
The information of the oriT region
oriTDB accession number 100184
Name oriT_pVA380-1  insolico
Sequence Completeness core
oriT length 36 nt
oriT sequence ACCTTTACTATGTAAAGGCTAGTACGTTACACTTTA
IR (inverted repeat)[2-8] [12-18] nt  (CCTTTAC..GTAAAGG)
Location of nic site [26-27] nt
Conserved sequence flanking the
  nic site 		TAGTACG|TTA
Note _
L:2-8;R:12-18;D:26-27
Visualization of oriT structure
Reference
[1] Grohmann E et al (2003) Conjugative plasmid transfer in gram-positive bacteria. Microbiol Mol Biol Rev. 67(2):277-301. [PMID:12794193]
I. Information of Relaxase
ID 177
Name Mob_pVA380 insolico
GenBank accession number AAA19677
Family MOBV
Length 430 aa
UniProt ID Q54160
PDB ID _
Pfam Mob_Pre [PF01076.18], Evalue: 4.90E-73, Aligned region: 1..195
Note relaxase
Protein sequence [Download] MSYMVARMQKMKAGNLGGAFKHNERVFETHSNKDIDPSRSHLNYELTDRDRSVSYEKQIK
DYVNENKVSNTRAIRKDAVLCDEWIITSDKQFFEQLDEEQTRAFFETAKNYFAENYGESN
IAYASVHLDESTPHMHMGVVPFENGKLSSKSMFDREELKHIQEDLPRYMSDHGFELERGK
LNSEAKHKTVAEFKRAMADMELKEELLEKYHAPLFVDERTGELNNDTEAFWHEKEFADMF
EVQSPIRETTNREKMDWLRKQYQEELKKLESSKKPLEDDLSHLEELLDEKTKEYIKIDSE
TSERLSELSKAEGYINTLENYSKSLEAKIERLEREGLKLEKLKTQIADLKIMSEKELAAI
TPKKGVFGKEYVELTKEQFEEFKGLIYRSRNLVHQKELENEQLRRIVPLRRSKRFEASWN
ELKKKVRERA
Reference
[1] LeBlanc DJ et al (1993) Identification and characterization of a mobilization gene in the streptococcal plasmid, pVA380-1. Plasmid. 30(3):296-302. [PMID:8302939]


II. Auxiliary DNA-binding protein(s) of the relaxosome
# ID Name GenBank Length Note
1 255 _ insolico _ _ _
 N/A
Information of plasmid
ID 177
Plasmid name pVA380-1
GenBank accession number M96957.1
Genome size 4.2 kb
Coordinate of oriT  [Strand] _
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Streptococcus sp. [1301]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU